Tbxas1 (thromboxane A synthase 1) - Rat Genome Database

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Gene: Tbxas1 (thromboxane A synthase 1) Chinchilla lanigera
Analyze
Symbol: Tbxas1
Name: thromboxane A synthase 1
RGD ID: 8928171
Description: ENCODES a protein that exhibits heme binding (ortholog); hydroperoxy icosatetraenoate dehydratase activity (ortholog); thromboxane-A synthase activity (ortholog); INVOLVED IN icosanoid metabolic process (ortholog); intracellular chloride ion homeostasis (ortholog); positive regulation of vasoconstriction (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH acute necrotizing pancreatitis (ortholog); Alcoholic Liver Diseases (ortholog); arteriosclerosis (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: thromboxane A synthase 1 (platelet); thromboxane-A synthase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554943,160,653 - 3,334,411 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554943,161,032 - 3,321,974 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tbxas1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554943,160,653 - 3,334,411 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554943,161,032 - 3,321,974 (-)NCBIChiLan1.0ChiLan1.0
TBXAS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387139,778,242 - 140,020,293 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7139,777,051 - 140,020,325 (+)EnsemblGRCh38hg38GRCh38
GRCh377139,478,041 - 139,720,093 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367139,175,421 - 139,366,471 (+)NCBINCBI36Build 36hg18NCBI36
Build 347138,982,135 - 139,173,186NCBI
Celera7134,200,105 - 134,441,970 (+)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7133,772,488 - 134,013,944 (+)NCBIHuRef
CHM1_17139,412,286 - 139,654,615 (+)NCBICHM1_1
T2T-CHM13v2.07141,091,534 - 141,333,885 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27138,807,008 - 139,048,964 (+)NCBI
Tbxas1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39638,817,897 - 39,061,524 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl638,852,338 - 39,061,519 (+)EnsemblGRCm39 Ensembl
GRCm38638,864,159 - 39,084,590 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl638,875,404 - 39,084,585 (+)EnsemblGRCm38mm10GRCm38
MGSCv37638,868,985 - 39,034,578 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36638,848,593 - 39,014,186 (+)NCBIMGSCv36mm8
Celera638,900,560 - 39,068,678 (+)NCBICelera
Cytogenetic Map6B1NCBI
cM Map617.85NCBI
Tbxas1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8468,631,841 - 68,803,959 (+)NCBIGRCr8
mRatBN7.2467,664,963 - 67,837,096 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl467,665,007 - 67,837,096 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx472,601,545 - 72,761,480 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0468,522,641 - 68,682,583 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0466,919,149 - 67,090,895 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0466,624,181 - 66,846,745 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl466,670,618 - 66,846,805 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0466,481,238 - 66,651,613 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4466,502,253 - 66,677,538 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1466,778,382 - 66,953,668 (+)NCBI
Celera462,678,426 - 62,850,218 (+)NCBICelera
Cytogenetic Map4q23NCBI
TBXAS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26176,628,283 - 176,813,856 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1728,638,540 - 28,824,110 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07131,772,947 - 131,958,647 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17144,255,211 - 144,439,523 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7144,255,211 - 144,439,523 (+)Ensemblpanpan1.1panPan2
TBXAS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1168,870,283 - 9,032,105 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl168,870,284 - 9,023,462 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha169,713,633 - 9,875,421 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0168,790,596 - 8,952,392 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl168,790,601 - 8,943,758 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1168,741,298 - 8,903,058 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0168,585,677 - 8,747,453 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0168,654,393 - 8,816,178 (-)NCBIUU_Cfam_GSD_1.0
Tbxas1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511815,026,973 - 15,181,690 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365924,038,074 - 4,192,808 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365924,038,163 - 4,192,772 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBXAS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl189,717,294 - 9,886,681 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1189,717,291 - 9,886,699 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21810,223,765 - 10,394,512 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TBXAS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121108,584,458 - 108,779,357 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21108,628,570 - 108,779,163 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660725,240,087 - 5,435,240 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tbxas1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476520,146,138 - 20,315,797 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476520,145,769 - 20,314,992 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000003149   ⟹   ENSCLAP00000003085
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554943,160,653 - 3,322,004 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000003150   ⟹   ENSCLAP00000003086
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554943,161,120 - 3,334,411 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000003151   ⟹   ENSCLAP00000003087
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554943,161,120 - 3,334,411 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000003152   ⟹   ENSCLAP00000003088
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554943,161,120 - 3,322,004 (-)Ensembl
RefSeq Acc Id: XM_005405429   ⟹   XP_005405486
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554943,161,032 - 3,321,974 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005405430   ⟹   XP_005405487
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554943,161,032 - 3,321,974 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005405431   ⟹   XP_005405488
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554943,161,032 - 3,321,974 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505026   ⟹   XP_013360480
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554943,207,633 - 3,321,974 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005405487   ⟸   XM_005405430
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UR41 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005405488   ⟸   XM_005405431
- Peptide Label: isoform X3
- UniProtKB: A0A8C2UTW6 (UniProtKB/TrEMBL),   A0A8C2UNA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005405486   ⟸   XM_005405429
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UTI1 (UniProtKB/TrEMBL),   A0A8C2UNA2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013360480   ⟸   XM_013505026
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSCLAP00000003085   ⟸   ENSCLAT00000003149
RefSeq Acc Id: ENSCLAP00000003087   ⟸   ENSCLAT00000003151
RefSeq Acc Id: ENSCLAP00000003088   ⟸   ENSCLAT00000003152
RefSeq Acc Id: ENSCLAP00000003086   ⟸   ENSCLAT00000003150


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002208 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003149 ENTREZGENE
  ENSCLAT00000003149.1 UniProtKB/TrEMBL
  ENSCLAT00000003150.1 UniProtKB/TrEMBL
  ENSCLAT00000003151.1 UniProtKB/TrEMBL
  ENSCLAT00000003152 ENTREZGENE
  ENSCLAT00000003152.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.630.10 UniProtKB/TrEMBL
InterPro Cyt_P450 UniProtKB/TrEMBL
  Cyt_P450_CS UniProtKB/TrEMBL
  Cyt_P450_E_grp-I UniProtKB/TrEMBL
  Cyt_P450_sf UniProtKB/TrEMBL
NCBI Gene Tbxas1 ENTREZGENE
PANTHER THROMBOXANE-A SYNTHASE UniProtKB/TrEMBL
  THROMBOXANE-A SYNTHASE UniProtKB/TrEMBL
Pfam p450 UniProtKB/TrEMBL
PRINTS EP450I UniProtKB/TrEMBL
  P450 UniProtKB/TrEMBL
PROSITE CYTOCHROME_P450 UniProtKB/TrEMBL
Superfamily-SCOP SSF48264 UniProtKB/TrEMBL
UniProt A0A8C2UNA2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UR41 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UTI1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UTW6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Tbxas1  thromboxane A synthase 1    thromboxane A synthase 1 (platelet)  Symbol and/or name change 5135510 APPROVED