Camp (cathelicidin antimicrobial peptide)

Gene: Camp (cathelicidin antimicrobial peptide) Chinchilla lanigera

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Symbol:

Camp

Name:

cathelicidin antimicrobial peptide

RGD ID:

8926813

Description:

INVOLVED IN amyloid fibril formation (ortholog); antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); cellular response to interleukin-1 (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Erythema (ortholog); genetic disease (ortholog); FOUND IN cell projection (ortholog); extracellular space (ortholog); specific granule (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955420	24,911,920 - 24,914,698 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Erythema (ISO)

genetic disease (ISO)

Pneumococcal Meningitis (ISO)

Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ISO)

rosacea (ISO)

Sepsis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

amyloid fibril formation (ISO)

antimicrobial humoral immune response mediated by antimicrobial peptide (ISO)

cellular response to interleukin-1 (ISO)

cellular response to interleukin-6 (ISO)

cellular response to lipopolysaccharide (ISO)

cellular response to peptidoglycan (ISO)

cellular response to tumor necrosis factor (ISO)

chronic inflammatory response (ISO)

cytolysis (ISO)

cytolysis by host of symbiont cells (ISO)

defense response to bacterium (ISO)

defense response to Gram-negative bacterium (ISO)

defense response to Gram-positive bacterium (ISO)

innate immune response (ISO)

innate immune response in mucosa (ISO)

killing by host of symbiont cells (ISO)

neutrophil activation (ISO)

positive regulation of angiogenesis (ISO)

positive regulation of cell population proliferation (ISO)

positive regulation of interleukin-8 production (ISO)

positive regulation of protein phosphorylation (ISO)

Cellular Component

cell projection (ISO)

extracellular space (ISO)

specific granule (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Camp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955420	24,911,920 - 24,914,698 (+)	NCBI	ChiLan1.0	ChiLan1.0

CAMP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	48,223,495 - 48,225,485 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	48,223,347 - 48,225,491 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	48,264,985 - 48,266,975 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	48,239,866 - 48,241,979 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	48,239,865 - 48,241,979	NCBI
Celera	3	48,215,428 - 48,217,541 (+)	NCBI		Celera
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	48,318,971 - 48,321,115 (+)	NCBI		HuRef
CHM1_1	3	48,217,141 - 48,219,285 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	48,251,295 - 48,253,285 (+)	NCBI		T2T-CHM13v2.0

Camp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	109,676,445 - 109,678,524 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	109,676,447 - 109,678,685 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	109,847,377 - 109,849,456 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	109,847,379 - 109,849,617 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	109,749,891 - 109,751,970 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	109,704,793 - 109,706,855 (-)	NCBI		MGSCv36	mm8
Celera	9	109,574,006 - 109,576,084 (-)	NCBI		Celera
Cytogenetic Map	9	F2	NCBI
cM Map	9	59.8	NCBI

Camp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	118,720,184 - 118,721,998 (-)	NCBI		GRCr8
mRatBN7.2	8	109,841,729 - 109,843,543 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	109,841,729 - 109,843,543 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	115,457,212 - 115,459,026 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	113,656,393 - 113,658,207 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	111,499,195 - 111,501,009 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	117,930,557 - 117,932,371 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	117,930,546 - 117,932,518 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	117,283,070 - 117,284,884 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	114,214,914 - 114,216,728 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	8	109,131,521 - 109,133,335 (-)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

CAMP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	48,190,780 - 48,192,806 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	48,195,548 - 48,197,574 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	48,137,785 - 48,139,893 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	49,222,110 - 49,224,250 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	49,222,110 - 49,224,250 (+)	Ensembl	panpan1.1		panPan2

CAMP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	40,790,823 - 40,792,781 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	40,790,811 - 40,792,794 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	40,708,394 - 40,710,352 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	41,276,545 - 41,278,503 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	41,276,545 - 41,278,516 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	40,517,066 - 40,519,024 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	40,918,458 - 40,920,416 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	41,199,059 - 41,201,017 (-)	NCBI		UU_Cfam_GSD_1.0

LOC110255221
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	13	31,011,029 - 31,013,164 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CAMP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	9,610,180 - 9,618,629 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	9,610,298 - 9,613,016 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	157,484,000 - 157,493,140 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Camp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624730	73,429,893 - 73,431,104 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005383402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01021338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01002601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005383402 ⟹ XP_005383459

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955420	24,911,920 - 24,914,698 (+)	NCBI

Sequence:

show sequence

GGGGCCAAGAGTGCAGCGGGTCAGAGCGGGCACAATGGCAGGGGCCTGGCGGGTACTCGTCCTG
GTGCTGGGCTTGGCAGGGGTGTCCTGTGTACGCCGACCCCGGCTCAGATATGAGGACATTGTCA
CCAAGGCCTTGAAGGTCTACAATGATGGGCAGCAGGGGAGGCCCCTCTTCCGGCTGCTGGAAGC
TATCCCGCCTCCTAGGCTGAACTCCACCAGCAGGGTCCCGCTGAACTTCAGGATTAGAGAGACG
GTGTGCATCTCCACCCCGGAGAGACTGCAGCAGCCGGAAAACTGCGCCTTCCGGGAGGGCGGGG
AGGAGCGCATCTGCACCGGCCAATTTGCCAAGGTGCGGCTGCTGCGGAGCCTGACTGTCAGCTG
TGACCGGGACTGTGGGCGTGGCAGGCAGGCCCCCAGGCTGACACACGTTGAAGAGCCAGAGCCA
GCCGAGGTTGCTGATGTTGCGGAGGTCGCTGAGGCCCCCGACCCCTCTGAGGCTCAAGAAGTAG
CTGAGGCCCAAGAAGTAGCTGAGGCCCAAGAAGTAGCTGAGGCCCAAGAAGTAGCTGAGGCCCA
GGAAGTAGCTGAGGCCCAGGAAGTAGCTGAGGGCCCTGAGGCCCCCTAGACACCTGAGGCAGAA
CCCCCTGAGGCCAAGGCCACGCTGTCGCCTGTTGTCAGGAACCTGTATGAGAACGCCAAGTACG
ACATCATCTCCAACATCCTGAGAAACTTCTAGGGCCAGAAGGGAGAGGAGCCTGCGTCTGGCCT
GGGCCGTAGCACCTCCTGTCCTGCACTGCCCAGGGACCCCCTCTACGGTGACCCCTAAACTTCA
GCCCCCCTTTGCTCACCTGCTTCCCTCCACCTGATCTGCCTGCCCTTCTGGTGTCTGTAAATCC
TGTTTCTCCCGCAAGGCATGGCGGGGAAGTCACCTCCTCCAGGAAGCCCCCCTGCTTTCCCAGA
GCAGAAGCGTCCTTCCTGGTCCATTCAGTCCTCACACCGCGTGGTGTCACTGCTGTGTCCCTAG
TCAGCGTCCACCCACAGTGGTTCCACCAGCTGCAGCTGCACCCTATGAGGGCAGTTCCCTTGTG
CAAGACCCTGAGCACCTCTGCCCAGTCACTGTGGCAGACATGTGCCCCTTGACTGTCTGGAAAC
CTCGAGAATCACAGGGAGGGCTGAATAAAACATCCCCGCAGTAAA

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Protein Sequences


Protein RefSeqs	XP_005383459	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005383459 ⟸ XM_005383402
- Sequence:	show sequence MAGAWRVLVLVLGLAGVSCVRRPRLRYEDIVTKALKVYNDGQQGRPLFRLLEAIPPPRLNSTSR VPLNFRIRETVCISTPERLQQPENCAFREGGEERICTGQFAKVRLLRSLTVSCDRDCGRGRQAP RLTHVEEPEPAEVADVAEVAEAPDPSEAQEVAEAQEVAEAQEVAEAQEVAEAQEVAEAQEVAEG PEAP hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	LOC102014676	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-25	Camp	cathelicidin antimicrobial peptide	LOC102014676	15 kDa protein A-like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD