Agbl1 (AGBL carboxypeptidase 1) - Rat Genome Database

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Gene: Agbl1 (AGBL carboxypeptidase 1) Chinchilla lanigera
Analyze
Symbol: Agbl1
Name: AGBL carboxypeptidase 1 (Ensembl:ATP/GTP binding protein like 1)
RGD ID: 8926719
Description: ENCODES a protein that exhibits metallocarboxypeptidase activity (ortholog); tubulin binding (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); Corneal Dystrophy, Fuchs Endothelial, 8 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP/GTP binding protein like 1; ATP/GTP binding protein-like 1; cytosolic carboxypeptidase 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541618,130,605 - 18,686,108 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541617,885,757 - 18,686,124 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Agbl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541618,130,605 - 18,686,108 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541617,885,757 - 18,686,124 (-)NCBIChiLan1.0ChiLan1.0
AGBL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381586,079,620 - 87,031,476 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1586,079,871 - 87,049,169 (+)EnsemblGRCh38hg38GRCh38
GRCh371586,622,851 - 87,572,283 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361584,486,246 - 85,373,287 (+)NCBINCBI36Build 36hg18NCBI36
Celera1563,086,740 - 63,973,544 (+)NCBICelera
Cytogenetic Map15q25.3NCBI
HuRef1562,798,057 - 63,684,981 (+)NCBIHuRef
CHM1_11586,526,864 - 87,413,136 (+)NCBICHM1_1
T2T-CHM13v2.01583,834,387 - 84,785,395 (+)NCBIT2T-CHM13v2.0
Agbl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39775,879,311 - 76,774,446 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl775,879,635 - 76,774,446 (+)EnsemblGRCm39 Ensembl
GRCm38776,229,591 - 77,124,698 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl776,229,887 - 77,124,698 (+)EnsemblGRCm38mm10GRCm38
MGSCv37783,465,022 - 84,031,140 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36776,284,575 - 76,573,636 (+)NCBIMGSCv36mm8
Celera773,765,804 - 74,340,195 (+)NCBICelera
Cytogenetic Map7D1NCBI
cM Map743.87NCBI
Agbl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81139,453,667 - 140,360,473 (+)NCBIGRCr8
mRatBN7.21130,043,914 - 130,950,739 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1130,043,970 - 130,951,638 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01137,798,862 - 138,711,126 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1137,799,185 - 138,711,126 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01138,789,634 - 139,710,124 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41131,756,893 - 131,944,875 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1122,147,459 - 123,040,161 (+)NCBICelera
Cytogenetic Map1q31NCBI
AGBL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21675,629,121 - 76,224,884 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11579,333,797 - 79,929,696 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01564,774,408 - 65,603,628 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11583,986,366 - 84,938,359 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1584,048,348 - 84,938,150 (+)Ensemblpanpan1.1panPan2
AGBL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1349,639,425 - 50,331,421 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl349,639,304 - 50,331,227 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha352,415,838 - 53,000,674 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0350,198,066 - 50,781,019 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl350,060,828 - 50,751,728 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1349,692,597 - 50,306,456 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0349,929,690 - 50,515,701 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0350,269,103 - 50,854,979 (+)NCBIUU_Cfam_GSD_1.0
Agbl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640133,839,393 - 133,880,423 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648312,358,754 - 12,586,674 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648312,358,731 - 13,056,267 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGBL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1192,722,847 - 193,534,417 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11192,725,367 - 193,534,530 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21214,550,551 - 214,964,434 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AGBL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1294,702,646 - 5,528,743 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl294,703,207 - 5,294,973 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605941,633,731 - 42,381,338 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Agbl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476813,470,674 - 14,239,465 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476813,470,809 - 14,325,563 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005381584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005381585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013512654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01017393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDI01046647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000021795   ⟹   ENSCLAP00000021592
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541618,130,605 - 18,686,108 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000021796   ⟹   ENSCLAP00000021593
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541618,251,596 - 18,686,108 (-)Ensembl
RefSeq Acc Id: XM_005381584   ⟹   XP_005381641
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541617,901,664 - 18,686,124 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005381585   ⟹   XP_005381642
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541617,885,757 - 18,686,124 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013512654   ⟹   XP_013368108
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541617,901,664 - 18,679,543 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005381641 (Get FASTA)   NCBI Sequence Viewer  
  XP_005381642 (Get FASTA)   NCBI Sequence Viewer  
  XP_013368108 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000021592
  ENSCLAP00000021592.1
  ENSCLAP00000021593.1
Reference Protein Sequences
RefSeq Acc Id: XP_005381642   ⟸   XM_005381585
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VWN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005381641   ⟸   XM_005381584
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VWN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368108   ⟸   XM_013512654
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VWN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000021593   ⟸   ENSCLAT00000021796
RefSeq Acc Id: ENSCLAP00000021592   ⟸   ENSCLAT00000021795
Protein Domains
Cytosolic carboxypeptidase N-terminal   Peptidase M14 carboxypeptidase A


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014777 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021795 ENTREZGENE
  ENSCLAT00000021795.1 UniProtKB/TrEMBL
  ENSCLAT00000021796.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
  2.60.40.3120 UniProtKB/TrEMBL
  Zn peptidases UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  CBPC1/4 UniProtKB/TrEMBL
  Pepdidase_M14_N UniProtKB/TrEMBL
  Peptidase_M14 UniProtKB/TrEMBL
NCBI Gene Agbl1 ENTREZGENE
PANTHER CYTOSOLIC CARBOXYPEPTIDASE UniProtKB/TrEMBL
  CYTOSOLIC CARBOXYPEPTIDASE 4 UniProtKB/TrEMBL
Pfam Pepdidase_M14_N UniProtKB/TrEMBL
  Peptidase_M14 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
  Zn-dependent exopeptidases UniProtKB/TrEMBL
UniProt A0A8C2VWN7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YT84_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-10 Agbl1  AGBL carboxypeptidase 1  Agbl1  ATP/GTP binding protein like 1  Symbol and/or name change 5135510 APPROVED
2016-08-03 Agbl1  ATP/GTP binding protein like 1    ATP/GTP binding protein-like 1  Symbol and/or name change 5135510 APPROVED