Mga (MAX dimerization protein MGA) - Rat Genome Database

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Gene: Mga (MAX dimerization protein MGA) Chinchilla lanigera
Analyze
Symbol: Mga
Name: MAX dimerization protein MGA
RGD ID: 8926624
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); B-lymphoblastic leukemia/lymphoma (ortholog); Bloom syndrome (ortholog); FOUND IN MLL1 complex (ortholog); transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554168,471,134 - 8,563,842 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554168,416,236 - 8,566,371 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mga
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554168,471,134 - 8,563,842 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554168,416,236 - 8,566,371 (+)NCBIChiLan1.0ChiLan1.0
MGA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381541,621,224 - 41,769,940 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1541,621,134 - 41,773,081 (+)EnsemblGRCh38hg38GRCh38
GRCh371541,913,422 - 42,062,138 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361539,739,902 - 39,849,433 (+)NCBINCBI36Build 36hg18NCBI36
Build 341539,839,866 - 39,849,431NCBI
Celera1518,720,565 - 18,829,777 (+)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1518,801,361 - 18,910,462 (+)NCBIHuRef
CHM1_11542,071,104 - 42,180,606 (+)NCBICHM1_1
T2T-CHM13v2.01539,427,379 - 39,575,822 (+)NCBIT2T-CHM13v2.0
Mga
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392119,702,974 - 119,800,610 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2119,727,709 - 119,800,062 (+)EnsemblGRCm39 Ensembl
GRCm382119,872,503 - 119,970,129 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2119,897,228 - 119,969,581 (+)EnsemblGRCm38mm10GRCm38
MGSCv372119,722,964 - 119,795,317 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362119,594,114 - 119,656,406 (+)NCBIMGSCv36mm8
Celera2121,052,811 - 121,127,205 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.97NCBI
Mga
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83127,300,558 - 127,396,694 (+)NCBIGRCr8
mRatBN7.23106,851,216 - 106,942,908 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3106,851,140 - 106,941,043 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03111,669,645 - 111,760,822 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3111,699,021 - 111,759,911 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03118,218,346 - 118,310,451 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,407,792 - 106,474,833 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3105,783,558 - 105,850,744 (+)NCBICelera
Cytogenetic Map3q35NCBI
MGA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21630,860,256 - 31,023,137 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11535,011,470 - 35,161,947 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01520,560,842 - 20,710,269 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11538,800,567 - 38,948,847 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1538,839,708 - 38,948,847 (+)Ensemblpanpan1.1panPan2
MGA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1308,633,122 - 8,805,822 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl308,711,091 - 8,802,324 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha308,692,097 - 8,864,773 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0308,838,572 - 8,940,861 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl308,767,898 - 8,940,656 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1308,688,977 - 8,861,620 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0308,796,546 - 8,965,625 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0308,927,629 - 9,100,331 (+)NCBIUU_Cfam_GSD_1.0
Mga
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864087,098,470 - 87,226,654 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364714,946,124 - 5,073,849 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364714,946,770 - 5,073,925 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MGA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1129,594,795 - 129,697,408 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11129,590,645 - 129,697,434 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21144,415,283 - 144,467,023 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MGA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12641,215,424 - 41,381,828 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2641,218,082 - 41,311,526 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604899,617,984 - 99,786,145 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mga
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248048,852,345 - 8,955,868 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248048,796,383 - 8,957,343 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005381292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005381299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013512575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013512576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013512577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013512578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013512579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013512580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013512581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013512582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013512583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013512584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013512585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01017051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01017063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDF01245272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000020730   ⟹   ENSCLAP00000020532
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554168,471,134 - 8,563,842 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000020731   ⟹   ENSCLAP00000020533
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554168,471,134 - 8,563,842 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000020732   ⟹   ENSCLAP00000020534
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554168,471,134 - 8,563,842 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000020733   ⟹   ENSCLAP00000020535
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554168,471,134 - 8,563,842 (+)Ensembl
RefSeq Acc Id: XM_005381292   ⟹   XP_005381349
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554168,461,399 - 8,566,371 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005381299   ⟹   XP_005381356
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554168,461,399 - 8,566,371 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512575   ⟹   XP_013368029
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554168,461,399 - 8,566,371 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512576   ⟹   XP_013368030
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554168,416,495 - 8,566,371 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512577   ⟹   XP_013368031
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554168,461,399 - 8,566,371 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512578   ⟹   XP_013368032
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554168,462,107 - 8,566,371 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512579   ⟹   XP_013368033
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554168,416,236 - 8,566,371 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512580   ⟹   XP_013368034
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554168,462,107 - 8,566,371 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512581   ⟹   XP_013368035
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554168,462,439 - 8,566,371 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512582   ⟹   XP_013368036
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554168,416,824 - 8,566,371 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512583   ⟹   XP_013368037
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554168,461,399 - 8,566,371 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512584   ⟹   XP_013368038
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554168,461,399 - 8,566,371 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013512585   ⟹   XP_013368039
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554168,461,399 - 8,566,371 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005381349   ⟸   XM_005381292
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VWF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005381356   ⟸   XM_005381299
- Peptide Label: isoform X5
- UniProtKB: A0A8C2VWF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368033   ⟸   XM_013512579
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VWF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368030   ⟸   XM_013512576
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VWF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368036   ⟸   XM_013512582
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VWF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368029   ⟸   XM_013512575
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VWF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368037   ⟸   XM_013512583
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VWF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368039   ⟸   XM_013512585
- Peptide Label: isoform X6
- UniProtKB: A0A8C2VTS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368038   ⟸   XM_013512584
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VWF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368031   ⟸   XM_013512577
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VWF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368032   ⟸   XM_013512578
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VWF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368034   ⟸   XM_013512580
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VWF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368035   ⟸   XM_013512581
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VWF5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000020533   ⟸   ENSCLAT00000020731
RefSeq Acc Id: ENSCLAP00000020532   ⟸   ENSCLAT00000020730
RefSeq Acc Id: ENSCLAP00000020535   ⟸   ENSCLAT00000020733
RefSeq Acc Id: ENSCLAP00000020534   ⟸   ENSCLAT00000020732
Protein Domains
bHLH   T-box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014067 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020730 ENTREZGENE
  ENSCLAT00000020730.1 UniProtKB/TrEMBL
  ENSCLAT00000020731.1 UniProtKB/TrEMBL
  ENSCLAT00000020732.1 UniProtKB/TrEMBL
  ENSCLAT00000020733 ENTREZGENE
  ENSCLAT00000020733.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.820 UniProtKB/TrEMBL
  4.10.280.10 UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
  MAX_gene-associated_protein UniProtKB/TrEMBL
  MGA_dom UniProtKB/TrEMBL
  p53-like_TF_DNA-bd UniProtKB/TrEMBL
  T-box_DNA-bd UniProtKB/TrEMBL
  T-box_sf UniProtKB/TrEMBL
  TF_T-box UniProtKB/TrEMBL
  TF_T-box_CS UniProtKB/TrEMBL
NCBI Gene Mga ENTREZGENE
PANTHER PTHR11267 UniProtKB/TrEMBL
  PTHR11267:SF32 UniProtKB/TrEMBL
Pfam DUF4801 UniProtKB/TrEMBL
  HLH UniProtKB/TrEMBL
  T-box UniProtKB/TrEMBL
PRINTS TBOX UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/TrEMBL
  TBOX_2 UniProtKB/TrEMBL
  TBOX_3 UniProtKB/TrEMBL
SMART HLH UniProtKB/TrEMBL
  TBOX UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/TrEMBL
  SSF49417 UniProtKB/TrEMBL
UniProt A0A8C2VTR6_CHILA UniProtKB/TrEMBL
  A0A8C2VTS3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VWF5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VYY4_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 Mga  MAX dimerization protein MGA    MGA, MAX dimerization protein  Symbol and/or name change 5135510 APPROVED