Cmc2 (C-X9-C motif containing 2) - Rat Genome Database

Name: Cmc2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Cmc2 (C-X9-C motif containing 2) Chinchilla lanigera

Analyze

Symbol:

Cmc2

Name:

C-X9-C motif containing 2

RGD ID:

8925249

Description:

ASSOCIATED WITH Breast Neoplasms (ortholog); giant axonal neuropathy 1 (ortholog); FOUND IN mitochondrion (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

C-x(9)-C motif containing 2; COX assembly mitochondrial protein 2 homolog

RGD Orthologs

Human

Mouse

Rat

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955522	3,773,997 - 3,802,336 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955522	3,774,136 - 3,801,892 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Neoplasms (ISO)

giant axonal neuropathy 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

mitochondrion (ISO)

Molecular Function

protein binding (ISO)

References

References - curated


1.	Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data

Cmc2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955522	3,773,997 - 3,802,336 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955522	3,774,136 - 3,801,892 (-)	NCBI	ChiLan1.0	ChiLan1.0

CMC2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	16	80,966,448 - 81,020,270 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	16	80,966,448 - 81,007,036 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	16	81,000,345 - 81,040,490 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	16	81,009,699 - 81,040,713 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	79,567,200 - 79,597,991 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	16	65,308,104 - 65,338,903 (-)	NCBI
Cytogenetic Map	16	q23.2	NCBI
HuRef	16	66,766,556 - 66,797,378 (-)	NCBI		HuRef
CHM1_1	16	82,421,068 - 82,451,870 (-)	NCBI		CHM1_1

Cmc2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	117,615,424 - 117,671,061 (-)	NCBI	GRCm39		mm39
GRCm38	8	116,888,685 - 116,944,322 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	116,888,685 - 116,921,455 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	119,412,585 - 119,445,336 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	119,775,495 - 119,807,413 (-)	NCBI			mm8
Celera	8	121,107,831 - 121,140,821 (-)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI

Cmc2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	44,943,283 - 44,997,408 (-)	NCBI
Rnor_6.0 Ensembl	19	49,433,590 - 49,448,072 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	19	49,433,332 - 49,457,641 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	19	60,224,644 - 60,248,869 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	47,002,952 - 47,028,957 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	19	44,218,029 - 44,244,870 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

CMC2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	16	81,009,625 - 81,040,354 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	81,009,625 - 81,040,355 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	16	61,582,018 - 61,612,597 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

LOC102155476
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	5	70,821,294 - 70,836,763 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	10	6,581,983 - 6,582,314 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Cmc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936475	28,657,623 - 28,682,947 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CMC2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	6	7,254,937 - 7,278,714 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CMC2
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	66,426,682 - 66,459,610 (-)	NCBI
ChlSab1.1 Ensembl	5	66,426,557 - 66,460,003 (-)	Ensembl

Cmc2
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624746	6,330,932 - 6,369,245 (+)	NCBI

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005409349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005409350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013507101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013507102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013507103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001231903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_264624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_264626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_264627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01068397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01068398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01002932	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSCLAT00000000371 ⟹ ENSCLAP00000000343

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955522	3,773,997 - 3,802,336 (-)	Ensembl

RefSeq Acc Id:

XM_005409349 ⟹ XP_005409406

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955522	3,774,136 - 3,801,596 (-)	NCBI

Sequence:

show sequence

CCGGGCGGTGGGGGAGTCGGCGGCGGCGGGGCGGGCCGAGGCGGGTCGTGGGGAAGCGCGCCGC
GGCTTTGGCTTCCTGCCGGGTGGCGCGGCTGGTGGGTCAAACTTTGCCGATCGGCGGGTGGGAC
TTTTCATAGCTGACTCTGGTTTCGGCCTTCCCGGTGTGGCCGAGCGTCGGTTGCACTGCTGTGA
TCTTCCACCTCCTGAAGATGCATCCTGACTTATCTCCACACCTGCACACGGAAGAATGCAACAT
CTTGATTAATTTGCTTAAGGAATGTCACAAAAATCACGGCATTCGGAAGTTTTTTGGTCATTGT
AATGATCTTGATCGCCAGATGAGAAAATGCTTGAAGAATGAGTACATGGAAAAGAGAACCAGAA
GCAGGGAGCATGGGAATGAGATGCGGAAAAGACTTTTCAATCCTTTAGAGGGATCTGAAAAATA
AGTTATTTTTTCACTGGAGAATGACTGAGAGAAGACCTAAGGACTGTTGGTTGGTAGCGGAAAG
AACCCTTTCTTATTTGGTCTCCAGAATCCTTTGAGTGGAAAACGACCCGTGAAGAATCGGACTA
TGGAGGAATATGAAGACCTGGATTCTGAATGTTGAGCAGACGTGTTAGTGCCATCAGTTCTGCC
AGCACACACCCGACCTCCTCCATGCCTATTCCCTTTGTCTACATCCATCGAGTAACTTAGCTCC
TTAATAAACTAATTTCAGTCATCTTTT

hide sequence

RefSeq Acc Id:

XM_005409350 ⟹ XP_005409407

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955522	3,774,137 - 3,801,817 (-)	NCBI

Sequence:

show sequence

ACAGGGGGCGCCTTGGTGGGGTACAACGGAAGGGAAACTCGCGAGCCGCCGCTTCTGTCTTGTC
AGGAGAAGAGTTTTTGTTGCACTGCTGTGATCTTCCACCTCCTGAAGATGCATCCTGACTTATC
TCCACACCTGCACACGGAAGAATGCAACATCTTGATTAATTTGCTTAAGGAATGTCACAAAAAT
CACGGCATTCGGAAGTTTTTTGGTCATTGTAATGATCTTGATCGCCAGATGAGAAAATGCTTGA
AGAATGAGTACATGGAAAAGAGAACCAGAAGCAGGGAGCATGGGAATGAGATGCGGAAAAGACT
TTTCAATCCTTTAGAGGGATCTGAAAAATAAGTTATTTTTTCACTGGAGAATGACTGAGAGAAG
ACCTAAGGACTGTTGGTTGGTAGCGGAAAGAACCCTTTCTTATTTGGTCTCCAGAATCCTTTGA
GTGGAAAACGACCCGTGAAGAATCGGACTATGGAGGAATATGAAGACCTGGATTCTGAATGTTG
AGCAGACGTGTTAGTGCCATCAGTTCTGCCAGCACACACCCGACCTCCTCCATGCCTATTCCCT
TTGTCTACATCCATCGAGTAACTTAGCTCCTTAATAAACTAATTTCAGTCATCTTT

hide sequence

RefSeq Acc Id:

XM_013507101 ⟹ XP_013362555

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955522	3,774,137 - 3,801,892 (-)	NCBI

Sequence:

show sequence

CAAAGCCACCAATGGCATGTCCTGCCGCCTACACGCTCCGTCCACCAGGCTAGGACTTTGGACT
ACAACCTGGGCACAGGGGGCGCCTTGGTGGGGTACAACGGAAGGGAAACTCGCGAGCCGCCGCT
TCTGTCTTGTCAGGAGAAGAGTTTTTGTAAGTGAAGGCCAGCACGGCATTCGGAAGTTTTTTGG
TCATTGTAATGATCTTGATCGCCAGATGAGAAAATGCTTGAAGAATGAGTACATGGAAAAGAGA
ACCAGAAGCAGGGAGCATGGGAATGAGATGCGGAAAAGACTTTTCAATCCTTTAGAGGGATCTG
AAAAATAAGTTATTTTTTCACTGGAGAATGACTGAGAGAAGACCTAAGGACTGTTGGTTGGTAG
CGGAAAGAACCCTTTCTTATTTGGTCTCCAGAATCCTTTGAGTGGAAAACGACCCGTGAAGAAT
CGGACTATGGAGGAATATGAAGACCTGGATTCTGAATGTTGAGCAGACGTGTTAGTGCCATCAG
TTCTGCCAGCACACACCCGACCTCCTCCATGCCTATTCCCTTTGTCTACATCCATCGAGTAACT
TAGCTCCTTAATAAACTAATTTCAGTCATCTTT

hide sequence

RefSeq Acc Id:

XM_013507102 ⟹ XP_013362556

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955522	3,774,137 - 3,801,808 (-)	NCBI

Sequence:

show sequence

GCCTTGGTGGGGTACAACGGAAGGGAAACTCGCGAGCCGCCGCTTCTGTCTTGTCAGGAGAAGA
GTTTTTGTAAGTGAAGGCCAGGTTGCACTGCTGTGATCTTCCACCTCCTGAAGATGCATCCTGA
CTTATCTCCACACCTGCACACGGAAGAATGCAACATCTTGATTAATTTGCTTAAGGAATGTCAC
AAAAATCACGGCATTCGGAAGTTTTTTGGTCATTGTAATGATCTTGATCGCCAGATGAGAAAAT
GCTTGAAGAATGAGTACATGGAAAAGAGAACCAGAAGCAGGGAGCATGGGAATGAGATGCGGAA
AAGACTTTTCAATCCTTTAGAGGGATCTGAAAAATAAGTTATTTTTTCACTGGAGAATGACTGA
GAGAAGACCTAAGGACTGTTGGTTGGTAGCGGAAAGAACCCTTTCTTATTTGGTCTCCAGAATC
CTTTGAGTGGAAAACGACCCGTGAAGAATCGGACTATGGAGGAATATGAAGACCTGGATTCTGA
ATGTTGAGCAGACGTGTTAGTGCCATCAGTTCTGCCAGCACACACCCGACCTCCTCCATGCCTA
TTCCCTTTGTCTACATCCATCGAGTAACTTAGCTCCTTAATAAACTAATTTCAGTCATCTTT

hide sequence

RefSeq Acc Id:

XM_013507103 ⟹ XP_013362557

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955522	3,774,137 - 3,801,813 (-)	NCBI

Sequence:

show sequence

GGGGCGCCTTGGTGGGGTACAACGGAAGGGAAACTCGCGAGCCGCCGCTTCTGTCTTGTCAGGA
GAAGAGTTTTTGTAAGTGAAGGCCAGACGGTCCCTGACATAACGATGGTTCGACTTAGGATTTT
TCAACTTTACAATGATGTGAAAGCAATGCACATTCAGTAGAAACCATTCATCAAAGTTTTGATC
TTTCCCCTGGCTGGGCTATACGGTGCAATATTCTCTCTTGATACTGGGCAGTGGCAGCCAGCTA
TAGCTGCTAGTCAGCCTCGTGATCACAAGGGTAAACTTTACAGTGTATTGTTTACCCACCTTTT
TGGATATTGTGTTTTGTGTTTTTGTGTCTGATCATGTCTGCAAAGCGCCCATCTGTGTCTCCTG
CTTCTGGTGAAAAGAAGAGGAGGAAGGCAATTACTCTTGAGATGAAACTCAAAATAATTGCCCA
GCATGAAGGTGGCAAACCCGTAATGGTCATCTCACGTGAGTTAGGACTTTCGCAGTCCACCATC
TCAACCATCCTAAAGGATAAGAAGCGCATTAGCGATGCAGTGAAATCGTCTGCATCAATTAAGT
CCACGGTCATCACAAAGAAAAGAGCTGGGCCAATTGATGATATGGAAAAGTTACTGGTTGAGTG
GATAGAGGAGCAGATACAGAACCGCATACCACTTAGCCTACTGATGATCCAGGCGAAGGCAAGA
AGTCTTTTCAATATGCTGAAAGAGCATGCTGATCCCACGTATACACAGATGTTTACAGCAAGTC
ACGGATGGTTCCAGCGTTTCAAAAAGCGTCATAATTTTCATACTGTTAAGGTCACCTGTGAGGC
AGCAGGTGCTGATATCGAATGTGCTGAAGCTTTTAAGGAAGAGCTGCACAGGATAATTGTAGAA
CAGAAATATTTACCAGAACAAATATTTAATGTTGACGAAACAAGCTTGTTCTGGAAGCGACTGC
CAGAGTGCACATACATTAATCAAGAGTCCAAGGCAATACCAGGATTCAGAGACCATGTAACTCT
GCTTTTGGGTGGAAATGTTGCAGGGTTCAAATTAAAGCCTTTTCTAATCTACCACTCGGAGAAC
CCTAGGGCCTTCAAGAATGTGAGCAAACATACACTTCCTGTTCACTATCGCCATAACAAGAAGG
CCTGGATGACATCAGCATTGTTTGAAGACTGGTTTTTGAACTGTTTTATTCCACAGGCAAAAGA
ATATTGTAGGCAAAACAACATTGCATTTAAGATTCTTCTGATCTTAGATGATGCTCCTGGGCAT
CCACAGCATATTGGCACCATGCATCCTGATGTAAAAGTTGTATATTTACCGCTGAGCACAGCCA
CACTCATTCAACCAATGGACCAAGGTGCAATAGCTGCGTTCAAAGCACAGTACTTACGTCAGAC
ATTTGCACAGGCTGTGGAAGCAACTGAATCTGGCCAAACACTCCTAGAGTTTTGGAAAGGGTTT
AACATTCTGAATGCTGTCCAAAACATTGCTGCTGCATGGGAAGAAGTCACAGAGCAGTGCATGA
GCTGTATTTGGAAGAAAGTTTTGAAGACATATGGGAACACATTCAAAGGCTTTAACAAAGATCA
CACTGTTGATGAAGTAGTGAGTAATAAGATATTAGTGCTTGGAAAACAGCTAGAATTGGACATC
AGTGAAGGGGATATTCATGAGATTGTCAGCATTAAGACTGAGGAGATTTCAGGTGAAGAGCTGC
TTGAATTGCAGAGAGAAAGGAGCAAAAAAGTTGAAGCAGAGGAAGAAGTCATACCCAAGCCACT
AAAAAAGTTTACAACAAAGAAACTGGCAGAGGCATTTGCTGCTATCAGCAGGGGCATGAGGATG
TTAGAAGAAATGGATGGCAATTATGAGAGATTTTCCAGAGCCGACAGGCAGATACAGGATGCTC
TTGTTTGTTATAGAGAAATATATAACGAAAAGAAAACACAAACTGTATGTTCGAAACCCGATAG
CATCATGAGAAACACTGTGCCTGCTGCGTCGACAGCTAATGTCAGTGCCCCTGTGCCGTCTGCC
AGCTCTCCCAGTTCTTCTCGAGTCTCACCAGAAGGGAGGAGGATCAGTAACGTGGGAACGGTAG
CATCCTCATCATTCAGCAATAAATTTTAAGTTCATGCTGTAACATTCTTCAGGCCAAGTGTGTT
TTCAGCTGTGTGCGTTGATGGTTGCACTGCTGTGATCTTCCACCTCCTGAAGATGCATCCTGAC
TTATCTCCACACCTGCACACGGAAGAATGCAACATCTTGATTAATTTGCTTAAGGAATGTCACA
AAAATCACGGCATTCGGAAGTTTTTTGGTCATTGTAATGATCTTGATCGCCAGATGAGAAAATG
CTTGAAGAATGAGTACATGGAAAAGAGAACCAGAAGCAGGGAGCATGGGAATGAGATGCGGAAA
AGACTTTTCAATCCTTTAGAGGGATCTGAAAAATAAGTTATTTTTTCACTGGAGAATGACTGAG
AGAAGACCTAAGGACTGTTGGTTGGTAGCGGAAAGAACCCTTTCTTATTTGGTCTCCAGAATCC
TTTGAGTGGAAAACGACCCGTGAAGAATCGGACTATGGAGGAATATGAAGACCTGGATTCTGAA
TGTTGAGCAGACGTGTTAGTGCCATCAGTTCTGCCAGCACACACCCGACCTCCTCCATGCCTAT
TCCCTTTGTCTACATCCATCGAGTAACTTAGCTCCTTAATAAACTAATTTCAGTCATCTTT

hide sequence

RefSeq Acc Id:

XR_001231903

RefSeq Status:

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955522	3,790,008 - 3,801,813 (-)	NCBI

Sequence:

show sequence

GGGGCGCCTTGGTGGGGTACAACGGAAGGGAAACTCGCGAGCCGCCGCTTCTGTCTTGTCAGGA
GAAGAGTTTTTGTAAGTGAAGGCCAGACGGTCCCTGACATAACGATGGTTCGACTTAGGATTTT
TCAACTTTACAATGATGTGAAAGCAATGCACATTCAGTAGAAACCATTCATCAAAGTTTTGATC
TTTCCCCTGGCTGGGCTATACGGTGCAATATTCTCTCTTGATACTGGGCAGTGGCAGCCAGCTA
TAGCTGCTAGTCAGCCTCGTGATCACAAGGGTAAACTTTACAGTGTATTGTTTACCCACCTTTT
TGGATATTGTGTTTTGTGTTTTTGTGTCTGATCATGTCTGCAAAGCGCCCATCTGTGTCTCCTG
CTTCTGGTGAAAAGAAGAGGAGGAAGGCAATTACTCTTGAGATGAAACTCAAAATAATTGCCCA
GCATGAAGGTGGCAAACCCGTAATGGTCATCTCACGTGAGTTAGGACTTTCGCAGTCCACCATC
TCAACCATCCTAAAGGATAAGAAGCGCATTAGCGATGCAGTGAAATCGTCTGCATCAATTAAGT
CCACGGTCATCACAAAGAAAAGAGCTGGGCCAATTGATGATATGGAAAAGTTACTGGTTGAGTG
GATAGAGGAGCAGATACAGAACCGCATACCACTTAGCCTACTGATGATCCAGGCGAAGGCAAGA
AGTCTTTTCAATATGCTGAAAGAGCATGCTGATCCCACGTATACACAGATGTTTACAGCAAGTC
ACGGATGGTTCCAGCGTTTCAAAAAGCGTCATAATTTTCATACTGTTAAGGTCACCTGTGAGGC
AGCAGGTGCTGATATCGAATGTGCTGAAGCTTTTAAGGAAGAGCTGCACAGGATAATTGTAGAA
CAGAAATATTTACCAGAACAAATATTTAATGTTGACGAAACAAGCTTGTTCTGGAAGCGACTGC
CAGAGTGCACATACATTAATCAAGAGTCCAAGGCAATACCAGGATTCAGAGACCATGTAACTCT
GCTTTTGGGTGGAAATGTTGCAGGGTTCAAATTAAAGCCTTTTCTAATCTACCACTCGGAGAAC
CCTAGGGCCTTCAAGAATGTGAGCAAACATACACTTCCTGTTCACTATCGCCATAACAAGAAGG
CCTGGATGACATCAGCATTGTTTGAAGACTGGTTTTTGAACTGTTTTATTCCACAGGCAAAAGA
ATATTGTAGGCAAAACAACATTGCATTTAAGATTCTTCTGATCTTAGATGATGCTCCTGGGCAT
CCACAGCATATTGGCACCATGCATCCTGATGTAAAAGTTGTATATTTACCGCTGAGCACAGCCA
CACTCATTCAACCAATGGACCAAGGTGCAATAGCTGCGTTCAAAGCACAGTACTTACGTCAGAC
ATTTGCACAGGCTGTGGAAGCAACTGAATCTGGCCAAACACTCCTAGAGTTTTGGAAAGGGTTT
AACATTCTGAATGCTGTCCAAAACATTGCTGCTGCATGGGAAGAAGTCACAGAGCAGTGCATGA
GCTGTATTTGGAAGAAAGTTTTGAAGACATATGGGAACACATTCAAAGGCTTTAACAAAGATCA
CACTGTTGATGAAGTAGTGAGTAATAAGATATTAGTGCTTGGAAAACAGCTAGAATTGGACATC
AGTGAAGGGGATATTCATGAGATTGTCAGCATTAAGACTGAGGAGATTTCAGGTGAAGAGCTGC
TTGAATTGCAGAGAGAAAGGAGCAAAAAAGTTGAAGCAGAGGAAGAAGTCATACCCAAGCCACT
AAAAAAGTTTACAACAAAGAAACTGGCAGAGGCATTTGCTGCTATCAGCAGGGGCATGAGGATG
TTAGAAGAAATGGATGGCAATTATGAGAGATTTTCCAGAGCCGACAGGCAGATACAGGATGCTC
TTGTTTGTTATAGAGAAATATATAACGAAAAGAAAACACAAACTGTATGTTCGAAACCCGATAG
CATCATGAGAAACACTGTGCCTGCTGCGTCGACAGCTAATGTCAGTGCCCCTGTGCCGTCTGCC
AGCTCTCCCAGTTCTTCTCGAGTCTCACCAGAAGGGAGGAGGATCAGTAACGTGGGAACGGTAG
CATCCTCATCATTCAGCAATAAATTTTAAGTTCATGCTGTAACATTCTTCAGGCCAAGTGTGTT
TTCAGCTGTGTGCGTTGATGGTTGCACTGCTGTGA

hide sequence

RefSeq Acc Id:

XR_264624

RefSeq Status:

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955522	3,792,676 - 3,801,813 (-)	NCBI

Sequence:

show sequence

GGGGCGCCTTGGTGGGGTACAACGGAAGGGAAACTCGCGAGCCGCCGCTTCTGTCTTGTCAGGA
GAAGAGTTTTTACGGTCCCTGACATAACGATGGTTCGACTTAGGATTTTTCAACTTTACAATGA
TGTGAAAGCAATGCACATTCAGTAGAAACCATTCATCAAAGTTTTGATCTTTCCCCTGGCTGGG
CTATACGGTGCAATATTCTCTCTTGATACTGGGCAGTGGCAGCCAGCTATAGCTGCTAGTCAGC
CTCGTGATCACAAGGGTAAACTTTACAGTGTATTGTTTACCCACCTTTTTGGATATTGTGTTTT
GTGTTTTTGTGTCTGATCATGTCTGCAAAGCGCCCATCTGTGTCTCCTGCTTCTGGTGAAAAGA
AGAGGAGGAAGGCAATTACTCTTGAGATGAAACTCAAAATAATTGCCCAGCATGAAGGTGGCAA
ACCCGTAATGGTCATCTCACGTGAGTTAGGACTTTCGCAGTCCACCATCTCAACCATCCTAAAG
GATAAGAAGCGCATTAGCGATGCAGTGAAATCGTCTGCATCAATTAAGTCCACGGTCATCACAA
AGAAAAGAGCTGGGCCAATTGATGATATGGAAAAGTTACTGGTTGAGTGGATAGAGGAGCAGAT
ACAGAACCGCATACCACTTAGCCTACTGATGATCCAGGCGAAGGCAAGAAGTCTTTTCAATATG
CTGAAAGAGCATGCTGATCCCACGTATACACAGATGTTTACAGCAAGTCACGGATGGTTCCAGC
GTTTCAAAAAGCGTCATAATTTTCATACTGTTAAGGTCACCTGTGAGGCAGCAGGTGCTGATAT
CGAATGTGCTGAAGCTTTTAAGGAAGAGCTGCACAGGATAATTGTAGAACAGAAATATTTACCA
GAACAAATATTTAATGTTGACGAAACAAGCTTGTTCTGGAAGCGACTGCCAGAGTGCACATACA
TTAATCAAGAGTCCAAGGCAATACCAGGATTCAGAGACCATGTAACTCTGCTTTTGGGTGGAAA
TGTTGCAGGGTTCAAATTAAAGCCTTTTCTAATCTACCACTCGGAGAACCCTAGGGCCTTCAAG
AATGTGAGCAAACATACACTTCCTGTTCACTATCGCCATAACAAGAAGGCCTGGATGACATCAG
CATTGTTTGAAGACTGGTTTTTGAACTGTTTTATTCCACAGGCAAAAGAATATTGTAGGCAAAA
CAACATTGCATTTAAGATTCTTCTGATCTTAGATGATGCTCCTGGGCATCCACAGCATATTGGC
ACCATGCATCCTGATGTAAAAGTTGTATATTTACCGCTGAGCACAGCCACACTCATTCAACCAA
TGGACCAAGGTGCAATAGCTGCGTTCAAAGCACAGTACTTACGTCAGACATTTGCACAGGCTGT
GGAAGCAACTGAATCTGGCCAAACACTCCTAGAGTTTTGGAAAGGGTTTAACATTCTGAATGCT
GTCCAAAACATTGCTGCTGCATGGGAAGAAGTCACAGAGCAGTGCATGAGCTGTATTTGGAAGA
AAGTTTTGAAGACATATGGGAACACATTCAAAGGCTTTAACAAAGATCACACTGTTGATGAAGT
AGTGAGTAATAAGATATTAGTGCTTGGAAAACAGCTAGAATTGGACATCAGTGAAGGGGATATT
CATGAGATTGTCAGCATTAAGACTGAGGAGATTTCAGGTGAAGAGCTGCTTGAATTGCAGAGAG
AAAGGAGCAAAAAAGTTGAAGCAGAGGAAGAAGTCATACCCAAGCCACTAAAAAAGTTTACAAC
AAAGAAACTGGCAGAGGCATTTGCTGCTATCAGCAGGGGCATGAGGATGTTAGAAGAAATGGAT
GGCAATTATGAGAGATTTTCCAGAGCCGACAGGCAGATACAGGATGCTCTTGTTTGTTATAGAG
AAATATATAACGAAAAGAAAACACAAACTGTATGTTCGAAACCCGATAGCATCATGAGAAACAC
TGTGCCTGCTGCGTCGACAGCTAATGTCAGTGCCCCTGTGCCGTCTGCCAGCTCTCCCAGTTCT
TCTCGAGTCTCACCAGAAGGGAGGAGGATCAGTAACGTGGGAACGGTAGCATCCTCATCATTCA
GCAATAAATTTTAAGTTCATGCTGTAACATTCTTCAGGCCAAGTGTGTTTTCAGCTGTGTGCGT
TGATGATGTCTTCTAGTCCAATGGTGGTGAATCTACGGCATGCATGTTATGACGAAAGATGTTA
ATGTAAGAGTTAG

hide sequence

RefSeq Acc Id:

XR_264626

RefSeq Status:

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955522	3,792,676 - 3,801,716 (-)	NCBI

Sequence:

show sequence

ACTAAACCTGTCTTTGGGTTCGGTGTGCTGCTTTGGCGCTGCCGATCCTCGTTGGATCGTTGTG
CTTCCCCCGCAGTGCAGAAAAATGGGCCGACCGAGGGCGGGTGGCGCATGCGCCCCCCGGGCGG
TGGGGGAGTCGGCGGCGGCGGGGCGGGCCGAGGCGGGTCGTGGGGAAGCGCGCCGCGGCTTTGG
CTTCCTGCCGGGTGGCGCGGCTGGTGGGTCAAACTTTGCCGATCGGCGGGTGGGACTTTTCATA
GCTGACTCTGGTTTCGGCCTTCCCGGTGTGGCCGAGCGTCGACGGTCCCTGACATAACGATGGT
TCGACTTAGGATTTTTCAACTTTACAATGATGTGAAAGCAATGCACATTCAGTAGAAACCATTC
ATCAAAGTTTTGATCTTTCCCCTGGCTGGGCTATACGGTGCAATATTCTCTCTTGATACTGGGC
AGTGGCAGCCAGCTATAGCTGCTAGTCAGCCTCGTGATCACAAGGGTAAACTTTACAGTGTATT
GTTTACCCACCTTTTTGGATATTGTGTTTTGTGTTTTTGTGTCTGATCATGTCTGCAAAGCGCC
CATCTGTGTCTCCTGCTTCTGGTGAAAAGAAGAGGAGGAAGGCAATTACTCTTGAGATGAAACT
CAAAATAATTGCCCAGCATGAAGGTGGCAAACCCGTAATGGTCATCTCACGTGAGTTAGGACTT
TCGCAGTCCACCATCTCAACCATCCTAAAGGATAAGAAGCGCATTAGCGATGCAGTGAAATCGT
CTGCATCAATTAAGTCCACGGTCATCACAAAGAAAAGAGCTGGGCCAATTGATGATATGGAAAA
GTTACTGGTTGAGTGGATAGAGGAGCAGATACAGAACCGCATACCACTTAGCCTACTGATGATC
CAGGCGAAGGCAAGAAGTCTTTTCAATATGCTGAAAGAGCATGCTGATCCCACGTATACACAGA
TGTTTACAGCAAGTCACGGATGGTTCCAGCGTTTCAAAAAGCGTCATAATTTTCATACTGTTAA
GGTCACCTGTGAGGCAGCAGGTGCTGATATCGAATGTGCTGAAGCTTTTAAGGAAGAGCTGCAC
AGGATAATTGTAGAACAGAAATATTTACCAGAACAAATATTTAATGTTGACGAAACAAGCTTGT
TCTGGAAGCGACTGCCAGAGTGCACATACATTAATCAAGAGTCCAAGGCAATACCAGGATTCAG
AGACCATGTAACTCTGCTTTTGGGTGGAAATGTTGCAGGGTTCAAATTAAAGCCTTTTCTAATC
TACCACTCGGAGAACCCTAGGGCCTTCAAGAATGTGAGCAAACATACACTTCCTGTTCACTATC
GCCATAACAAGAAGGCCTGGATGACATCAGCATTGTTTGAAGACTGGTTTTTGAACTGTTTTAT
TCCACAGGCAAAAGAATATTGTAGGCAAAACAACATTGCATTTAAGATTCTTCTGATCTTAGAT
GATGCTCCTGGGCATCCACAGCATATTGGCACCATGCATCCTGATGTAAAAGTTGTATATTTAC
CGCTGAGCACAGCCACACTCATTCAACCAATGGACCAAGGTGCAATAGCTGCGTTCAAAGCACA
GTACTTACGTCAGACATTTGCACAGGCTGTGGAAGCAACTGAATCTGGCCAAACACTCCTAGAG
TTTTGGAAAGGGTTTAACATTCTGAATGCTGTCCAAAACATTGCTGCTGCATGGGAAGAAGTCA
CAGAGCAGTGCATGAGCTGTATTTGGAAGAAAGTTTTGAAGACATATGGGAACACATTCAAAGG
CTTTAACAAAGATCACACTGTTGATGAAGTAGTGAGTAATAAGATATTAGTGCTTGGAAAACAG
CTAGAATTGGACATCAGTGAAGGGGATATTCATGAGATTGTCAGCATTAAGACTGAGGAGATTT
CAGGTGAAGAGCTGCTTGAATTGCAGAGAGAAAGGAGCAAAAAAGTTGAAGCAGAGGAAGAAGT
CATACCCAAGCCACTAAAAAAGTTTACAACAAAGAAACTGGCAGAGGCATTTGCTGCTATCAGC
AGGGGCATGAGGATGTTAGAAGAAATGGATGGCAATTATGAGAGATTTTCCAGAGCCGACAGGC
AGATACAGGATGCTCTTGTTTGTTATAGAGAAATATATAACGAAAAGAAAACACAAACTGTATG
TTCGAAACCCGATAGCATCATGAGAAACACTGTGCCTGCTGCGTCGACAGCTAATGTCAGTGCC
CCTGTGCCGTCTGCCAGCTCTCCCAGTTCTTCTCGAGTCTCACCAGAAGGGAGGAGGATCAGTA
ACGTGGGAACGGTAGCATCCTCATCATTCAGCAATAAATTTTAAGTTCATGCTGTAACATTCTT
CAGGCCAAGTGTGTTTTCAGCTGTGTGCGTTGATGATGTCTTCTAGTCCAATGGTGGTGAATCT
ACGGCATGCATGTTATGACGAAAGATGTTAATGTAAGAGTTAG

hide sequence

RefSeq Acc Id:

XR_264627

RefSeq Status:

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955522	3,792,676 - 3,801,813 (-)	NCBI

Sequence:

show sequence

GGGGCGCCTTGGTGGGGTACAACGGAAGGGAAACTCGCGAGCCGCCGCTTCTGTCTTGTCAGGA
GAAGAGTTTTTGTAAGTGAAGGCCAGACGGTCCCTGACATAACGATGGTTCGACTTAGGATTTT
TCAACTTTACAATGATGTGAAAGCAATGCACATTCAGTAGAAACCATTCATCAAAGTTTTGATC
TTTCCCCTGGCTGGGCTATACGGTGCAATATTCTCTCTTGATACTGGGCAGTGGCAGCCAGCTA
TAGCTGCTAGTCAGCCTCGTGATCACAAGGGTAAACTTTACAGTGTATTGTTTACCCACCTTTT
TGGATATTGTGTTTTGTGTTTTTGTGTCTGATCATGTCTGCAAAGCGCCCATCTGTGTCTCCTG
CTTCTGGTGAAAAGAAGAGGAGGAAGGCAATTACTCTTGAGATGAAACTCAAAATAATTGCCCA
GCATGAAGGTGGCAAACCCGTAATGGTCATCTCACGTGAGTTAGGACTTTCGCAGTCCACCATC
TCAACCATCCTAAAGGATAAGAAGCGCATTAGCGATGCAGTGAAATCGTCTGCATCAATTAAGT
CCACGGTCATCACAAAGAAAAGAGCTGGGCCAATTGATGATATGGAAAAGTTACTGGTTGAGTG
GATAGAGGAGCAGATACAGAACCGCATACCACTTAGCCTACTGATGATCCAGGCGAAGGCAAGA
AGTCTTTTCAATATGCTGAAAGAGCATGCTGATCCCACGTATACACAGATGTTTACAGCAAGTC
ACGGATGGTTCCAGCGTTTCAAAAAGCGTCATAATTTTCATACTGTTAAGGTCACCTGTGAGGC
AGCAGGTGCTGATATCGAATGTGCTGAAGCTTTTAAGGAAGAGCTGCACAGGATAATTGTAGAA
CAGAAATATTTACCAGAACAAATATTTAATGTTGACGAAACAAGCTTGTTCTGGAAGCGACTGC
CAGAGTGCACATACATTAATCAAGAGTCCAAGGCAATACCAGGATTCAGAGACCATGTAACTCT
GCTTTTGGGTGGAAATGTTGCAGGGTTCAAATTAAAGCCTTTTCTAATCTACCACTCGGAGAAC
CCTAGGGCCTTCAAGAATGTGAGCAAACATACACTTCCTGTTCACTATCGCCATAACAAGAAGG
CCTGGATGACATCAGCATTGTTTGAAGACTGGTTTTTGAACTGTTTTATTCCACAGGCAAAAGA
ATATTGTAGGCAAAACAACATTGCATTTAAGATTCTTCTGATCTTAGATGATGCTCCTGGGCAT
CCACAGCATATTGGCACCATGCATCCTGATGTAAAAGTTGTATATTTACCGCTGAGCACAGCCA
CACTCATTCAACCAATGGACCAAGGTGCAATAGCTGCGTTCAAAGCACAGTACTTACGTCAGAC
ATTTGCACAGGCTGTGGAAGCAACTGAATCTGGCCAAACACTCCTAGAGTTTTGGAAAGGGTTT
AACATTCTGAATGCTGTCCAAAACATTGCTGCTGCATGGGAAGAAGTCACAGAGCAGTGCATGA
GCTGTATTTGGAAGAAAGTTTTGAAGACATATGGGAACACATTCAAAGGCTTTAACAAAGATCA
CACTGTTGATGAAGTAGTGAGTAATAAGATATTAGTGCTTGGAAAACAGCTAGAATTGGACATC
AGTGAAGGGGATATTCATGAGATTGTCAGCATTAAGACTGAGGAGATTTCAGGTGAAGAGCTGC
TTGAATTGCAGAGAGAAAGGAGCAAAAAAGTTGAAGCAGAGGAAGAAGTCATACCCAAGCCACT
AAAAAAGTTTACAACAAAGAAACTGGCAGAGGCATTTGCTGCTATCAGCAGGGGCATGAGGATG
TTAGAAGAAATGGATGGCAATTATGAGAGATTTTCCAGAGCCGACAGGCAGATACAGGATGCTC
TTGTTTGTTATAGAGAAATATATAACGAAAAGAAAACACAAACTGTATGTTCGAAACCCGATAG
CATCATGAGAAACACTGTGCCTGCTGCGTCGACAGCTAATGTCAGTGCCCCTGTGCCGTCTGCC
AGCTCTCCCAGTTCTTCTCGAGTCTCACCAGAAGGGAGGAGGATCAGTAACGTGGGAACGGTAG
CATCCTCATCATTCAGCAATAAATTTTAAGTTCATGCTGTAACATTCTTCAGGCCAAGTGTGTT
TTCAGCTGTGTGCGTTGATGATGTCTTCTAGTCCAATGGTGGTGAATCTACGGCATGCATGTTA
TGACGAAAGATGTTAATGTAAGAGTTAG

hide sequence

Protein Sequences


Protein RefSeqs	XP_005409406	(Get FASTA)	NCBI Sequence Viewer
	XP_005409407	(Get FASTA)	NCBI Sequence Viewer
	XP_013362555	(Get FASTA)	NCBI Sequence Viewer
	XP_013362556	(Get FASTA)	NCBI Sequence Viewer
	XP_013362557	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	XP_005409406 ⟸ XM_005409349
- Peptide Label:	isoform X2
- Sequence:	show sequence MHPDLSPHLHTEECNILINLLKECHKNHGIRKFFGHCNDLDRQMRKCLKNEYMEKRTRSREHGN EMRKRLFNPLEGSEK hide sequence

RefSeq Acc Id:	XP_005409407 ⟸ XM_005409350
- Peptide Label:	isoform X2
- Sequence:	show sequence MHPDLSPHLHTEECNILINLLKECHKNHGIRKFFGHCNDLDRQMRKCLKNEYMEKRTRSREHGN EMRKRLFNPLEGSEK hide sequence

RefSeq Acc Id:	XP_013362555 ⟸ XM_013507101
- Peptide Label:	isoform X1
- Sequence:	show sequence MSCRLHAPSTRLGLWTTTWAQGAPWWGTTEGKLASRRFCLVRRRVFVSEGQHGIRKFFGHCNDL DRQMRKCLKNEYMEKRTRSREHGNEMRKRLFNPLEGSEK hide sequence

RefSeq Acc Id:	XP_013362557 ⟸ XM_013507103
- Peptide Label:	isoform X2
- Sequence:	show sequence MHPDLSPHLHTEECNILINLLKECHKNHGIRKFFGHCNDLDRQMRKCLKNEYMEKRTRSREHGN EMRKRLFNPLEGSEK hide sequence

RefSeq Acc Id:	XP_013362556 ⟸ XM_013507102
- Peptide Label:	isoform X2
- Sequence:	show sequence MHPDLSPHLHTEECNILINLLKECHKNHGIRKFFGHCNDLDRQMRKCLKNEYMEKRTRSREHGN EMRKRLFNPLEGSEK hide sequence

RefSeq Acc Id:

ENSCLAP00000000343 ⟸ ENSCLAT00000000371

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000000295	Ensembl, ENTREZGENE
Ensembl Protein	ENSCLAP00000000343	ENTREZGENE
Ensembl Transcript	ENSCLAT00000000371	ENTREZGENE
NCBI Gene	LOC102028889	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Cmc2	C-X9-C motif containing 2		C-x(9)-C motif containing 2	Symbol and/or name change	5135510	APPROVED
2015-08-25	Cmc2	C-x(9)-C motif containing 2	LOC102028889	tigger transposable element-derived protein 1-like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD