Cmc2 (C-X9-C motif containing 2) - Rat Genome Database
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Gene: Cmc2 (C-X9-C motif containing 2) Chinchilla lanigera
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Symbol: Cmc2
Name: C-X9-C motif containing 2
RGD ID: 8925249
Description: ASSOCIATED WITH Breast Neoplasms (ortholog); giant axonal neuropathy 1 (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: C-x(9)-C motif containing 2; COX assembly mitochondrial protein 2 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555223,773,997 - 3,802,336 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555223,774,136 - 3,801,892 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Cmc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555223,773,997 - 3,802,336 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555223,774,136 - 3,801,892 (-)NCBIChiLan1.0ChiLan1.0
CMC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1680,966,448 - 81,020,270 (-)EnsemblGRCh38hg38GRCh38
GRCh381680,966,448 - 81,007,036 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371681,000,345 - 81,040,490 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh371681,009,699 - 81,040,713 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361679,567,200 - 79,597,991 (-)NCBINCBI36hg18NCBI36
Celera1665,308,104 - 65,338,903 (-)NCBI
Cytogenetic Map16q23.2NCBI
HuRef1666,766,556 - 66,797,378 (-)NCBIHuRef
CHM1_11682,421,068 - 82,451,870 (-)NCBICHM1_1
Cmc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398117,615,424 - 117,671,061 (-)NCBIGRCm39mm39
GRCm388116,888,685 - 116,944,322 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8116,888,685 - 116,921,455 (-)EnsemblGRCm38mm10GRCm38
MGSCv378119,412,585 - 119,445,336 (-)NCBIGRCm37mm9NCBIm37
MGSCv368119,775,495 - 119,807,413 (-)NCBImm8
Celera8121,107,831 - 121,140,821 (-)NCBICelera
Cytogenetic Map8E1NCBI
Cmc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21944,943,283 - 44,997,408 (-)NCBI
Rnor_6.0 Ensembl1949,433,590 - 49,448,072 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01949,433,332 - 49,457,641 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01960,224,644 - 60,248,869 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41947,002,952 - 47,028,957 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1944,218,029 - 44,244,870 (-)NCBICelera
Cytogenetic Map19q12NCBI
CMC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11681,009,625 - 81,040,354 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1681,009,625 - 81,040,355 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01661,582,018 - 61,612,597 (-)NCBIMhudiblu_PPA_v0panPan3
LOC102155476
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl570,821,294 - 70,836,763 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1106,581,983 - 6,582,314 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cmc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647528,657,623 - 28,682,947 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CMC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.167,254,937 - 7,278,714 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CMC2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1566,426,682 - 66,459,610 (-)NCBI
ChlSab1.1 Ensembl566,426,557 - 66,460,003 (-)Ensembl
Cmc2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247466,330,932 - 6,369,245 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000000371   ⟹   ENSCLAP00000000343
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555223,773,997 - 3,802,336 (-)Ensembl
RefSeq Acc Id: XM_005409349   ⟹   XP_005409406
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555223,774,136 - 3,801,596 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005409350   ⟹   XP_005409407
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555223,774,137 - 3,801,817 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013507101   ⟹   XP_013362555
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555223,774,137 - 3,801,892 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013507102   ⟹   XP_013362556
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555223,774,137 - 3,801,808 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013507103   ⟹   XP_013362557
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555223,774,137 - 3,801,813 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001231903
RefSeq Status:
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555223,790,008 - 3,801,813 (-)NCBI
Sequence:
RefSeq Acc Id: XR_264624
RefSeq Status:
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555223,792,676 - 3,801,813 (-)NCBI
Sequence:
RefSeq Acc Id: XR_264626
RefSeq Status:
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555223,792,676 - 3,801,716 (-)NCBI
Sequence:
RefSeq Acc Id: XR_264627
RefSeq Status:
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555223,792,676 - 3,801,813 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005409406   ⟸   XM_005409349
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005409407   ⟸   XM_005409350
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013362555   ⟸   XM_013507101
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013362557   ⟸   XM_013507103
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013362556   ⟸   XM_013507102
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000000343   ⟸   ENSCLAT00000000371


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000295 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000000343 ENTREZGENE
Ensembl Transcript ENSCLAT00000000371 ENTREZGENE
NCBI Gene LOC102028889 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Cmc2  C-X9-C motif containing 2    C-x(9)-C motif containing 2  Symbol and/or name change 5135510 APPROVED
2015-08-25 Cmc2  C-x(9)-C motif containing 2  LOC102028889  tigger transposable element-derived protein 1-like  Symbol and/or name change 5135510 APPROVED