Tbxa2r (thromboxane A2 receptor) - Rat Genome Database

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Gene: Tbxa2r (thromboxane A2 receptor) Chinchilla lanigera
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Symbol: Tbxa2r
Name: thromboxane A2 receptor
RGD ID: 8924957
Description: ENCODES a protein that exhibits thromboxane receptor activity (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); inflammatory response (ortholog); negative regulation of cell migration involved in sprouting angiogenesis (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ASSOCIATED WITH adult respiratory distress syndrome (ortholog); aspirin-induced respiratory disease (ortholog); asthma (ortholog); FOUND IN acrosomal vesicle (ortholog); nuclear speck (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554955,539,889 - 5,557,441 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554955,539,382 - 5,557,441 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Tbxa2r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554955,539,889 - 5,557,441 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554955,539,382 - 5,557,441 (-)NCBIChiLan1.0ChiLan1.0
TBXA2R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38193,594,507 - 3,606,875 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl193,594,507 - 3,606,875 (-)EnsemblGRCh38hg38GRCh38
GRCh37193,594,505 - 3,606,873 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36193,545,504 - 3,557,658 (-)NCBINCBI36hg18NCBI36
Build 34193,545,503 - 3,557,658NCBI
Celera193,531,342 - 3,543,669 (-)NCBI
Cytogenetic Map19p13.3NCBI
HuRef193,359,876 - 3,372,152 (-)NCBIHuRef
CHM1_1193,594,158 - 3,606,423 (-)NCBICHM1_1
T2T-CHM13v2.0193,572,690 - 3,584,998 (-)NCBI
Tbxa2r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391081,164,102 - 81,171,008 (+)NCBIGRCm39mm39
GRCm39 Ensembl1081,164,565 - 81,171,006 (+)Ensembl
GRCm381081,328,268 - 81,335,174 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1081,328,731 - 81,335,172 (+)EnsemblGRCm38mm10GRCm38
MGSCv371080,791,476 - 80,797,917 (+)NCBIGRCm37mm9NCBIm37
MGSCv361080,731,860 - 80,738,301 (+)NCBImm8
Celera1082,349,466 - 82,355,970 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Tbxa2r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.278,383,347 - 8,390,753 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl78,383,378 - 8,388,176 (-)Ensembl
Rnor_6.0711,253,153 - 11,259,233 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl711,253,180 - 11,257,977 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0711,419,887 - 11,425,971 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.479,867,739 - 9,872,536 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.179,867,738 - 9,872,536 (-)NCBI
Celera76,572,330 - 6,577,127 (-)NCBICelera
Cytogenetic Map7q11NCBI
TBXA2R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1193,572,454 - 3,581,924 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl193,570,290 - 3,581,924 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0192,621,606 - 2,632,800 (-)NCBIMhudiblu_PPA_v0panPan3
TBXA2R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12055,819,866 - 55,829,395 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2055,824,410 - 55,828,980 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2055,545,953 - 55,554,659 (+)NCBI
ROS_Cfam_1.02056,480,706 - 56,489,446 (+)NCBI
ROS_Cfam_1.0 Ensembl2056,480,655 - 56,490,031 (+)Ensembl
UMICH_Zoey_3.12055,536,340 - 55,545,063 (+)NCBI
UNSW_CanFamBas_1.02056,019,809 - 56,028,498 (+)NCBI
UU_Cfam_GSD_1.02056,218,510 - 56,227,219 (+)NCBI
Tbxa2r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118215,786,562 - 215,793,960 (+)NCBI
SpeTri2.0NW_0049365882,040,712 - 2,044,635 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBXA2R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl275,068,698 - 75,087,731 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1275,068,413 - 75,081,305 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103233689
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.163,354,358 - 3,365,779 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl63,355,314 - 3,359,761 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660815,119,245 - 5,134,213 (+)NCBIVero_WHO_p1.0
Tbxa2r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248286,291,167 - 6,309,482 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248286,291,010 - 6,312,438 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000015578   ⟹   ENSCLAP00000015417
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554955,539,889 - 5,557,441 (-)Ensembl
RefSeq Acc Id: XM_013505254   ⟹   XP_013360708
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554955,539,382 - 5,557,441 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013360708 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013360708   ⟸   XM_013505254
- Sequence:
RefSeq Acc Id: ENSCLAP00000015417   ⟸   ENSCLAT00000015578
Protein Domains
G_PROTEIN_RECEP_F1_2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010610 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000015417.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015578.1 UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Prostanoid_rcpt UniProtKB/TrEMBL
  Thbox_rcpt UniProtKB/TrEMBL
NCBI Gene Tbxa2r ENTREZGENE
PANTHER PTHR11866 UniProtKB/TrEMBL
PRINTS PROSTANOIDR UniProtKB/TrEMBL
  THROMBOXANER UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
UniProt A0A8C2VMB0_CHILA UniProtKB/TrEMBL