| Gene: Ptchd4 (patched domain containing 4) Chinchilla lanigera |
|
Analyze |
|
| Symbol: |
Ptchd4 |
| Name: |
patched domain containing 4 |
| RGD ID: |
8920943 |
| Description: |
ASSOCIATED WITH genetic disease (ortholog) |
| Type: |
protein-coding
|
| RefSeq Status: |
MODEL |
| Previously known as: |
patched domain-containing protein 4 |
| RGD Orthologs |
|
| Alliance Genes |
|
| More Info |
more info ...
|
| More Info |
|
| Latest Assembly: |
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly |
| NCBI Annotation Information: |
Annotation category: partial on reference assembly |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955437 | 12,254,176 - 12,423,871 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955437 | 12,253,731 - 12,423,865 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
|
| JBrowse: |
View Region in Genome Browser (JBrowse)
|
| Model |
|
Imported Disease Annotations - ClinVar
|
References
Additional References at PubMed
Genomics
Comparative Map Data
Ptchd4
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955437 | 12,254,176 - 12,423,871 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955437 | 12,253,731 - 12,423,865 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
|
PTCHD4
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 6 | 47,856,673 - 48,111,197 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 6 | 47,856,673 - 48,111,197 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 6 | 47,824,409 - 48,078,933 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 6 | 47,953,998 - 48,144,384 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 6 | 49,402,015 - 49,592,692 (-) | NCBI | | Celera | | | Cytogenetic Map | 6 | p12.3 | NCBI | | | | | HuRef | 6 | 47,573,689 - 47,763,951 (-) | NCBI | | HuRef | | | CHM1_1 | 6 | 47,848,697 - 48,039,382 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 6 | 47,698,467 - 47,952,968 (-) | NCBI | | T2T-CHM13v2.0 | | |
|
Ptchd4
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 17 | 42,626,646 - 43,004,339 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 17 | 42,626,838 - 42,815,968 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 17 | 42,315,851 - 42,507,742 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 17 | 42,315,947 - 42,505,077 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 17 | 42,452,896 - 42,644,690 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 17 | 41,317,589 - 41,507,471 (+) | NCBI | | MGSCv36 | mm8 | | MGSCv36 | 17 | 41,780,176 - 41,971,225 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 17 | 45,720,241 - 45,918,575 (+) | NCBI | | Celera | | | Cytogenetic Map | 17 | B3 | NCBI | | | | | cM Map | 17 | 19.65 | NCBI | | | | |
|
Ptchd4
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 9 | 25,951,395 - 26,163,296 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 9 | 18,462,934 - 18,666,272 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 9 | 18,463,737 - 18,665,705 (-) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 | 9 | 21,137,150 - 21,339,398 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 9 | 21,141,077 - 21,338,582 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 9 | 20,001,317 - 20,202,955 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 9 | 14,220,416 - 14,424,280 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 9 | 16,162,302 - 16,367,307 (-) | NCBI | | Celera | | | Cytogenetic Map | 9 | q13 | NCBI | | | | |
|
PTCHD4
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 5 | 62,369,575 - 62,607,535 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 6 | 58,235,720 - 58,473,613 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 6 | 47,440,981 - 47,652,718 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 6 | 48,724,043 - 48,915,518 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 6 | 48,724,318 - 48,916,307 (-) | Ensembl | panpan1.1 | | panPan2 | |
|
PTCHD4
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 12 | 15,910,253 - 16,094,827 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 12 | 15,916,840 - 16,095,556 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 12 | 16,007,216 - 16,060,826 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 12 | 16,543,805 - 16,597,465 (-) | NCBI | | ROS_Cfam_1.0 | | | UMICH_Zoey_3.1 | 12 | 16,063,763 - 16,117,369 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 12 | 16,146,821 - 16,200,403 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 12 | 16,292,916 - 16,346,683 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
|
Ptchd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
HiC_Itri_2 | NW_024404946 | 51,274,358 - 51,456,893 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936476 | 12,503,474 - 12,676,577 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936476 | 12,503,324 - 12,678,204 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
|
PTCHD4
(Sus scrofa - pig) |
|
PTCHD4
(Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | 17 | 24,216,587 - 24,413,202 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 17 | 24,217,389 - 24,412,311 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666044 | 47,893,154 - 48,091,257 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
|
Ptchd4
(Heterocephalus glaber - naked mole-rat) |
|
Expression
Sequence
| RefSeq Acc Id: |
ENSCLAT00000016490 ⟹ ENSCLAP00000016326 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
ChiLan1.0 Ensembl | NW_004955437 | 12,254,176 - 12,423,871 (-) | Ensembl |
|
| RefSeq Acc Id: |
XM_005389880 ⟹ XP_005389937 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
ChiLan1.0 | NW_004955437 | 12,253,731 - 12,423,865 (-) | NCBI |
|
| Sequence: |
TGCGGCCGCGGGCTGGGCGTGTGCGTGGGCCGGCACCCCGTCCTCTTCCTCACCGTGCCCGCCG
TGCTGACCATCGCCTGCGGCCTCAGCGCGCTGCGCCGCTTCCAGCCCGAGGGCGACCTGGAGCG
CCTGGTGGCCCCCAGCCACAGCCTAGCCAAGATCGAGCGCAGCCTGGCCGGCAGCCTCTTCCCG
CTGGACCAGTCCAAAAGCCAGCTCTATTCGGACTTGCACACCCCTGGGAGGTACGGCAGGGTGA
TCCTCCTCTCGCCACCCGGGGACAATGTTTTGCTCCAGGCCGAGGGGATCCTGCAGACCCACCG
AGCCGTGCTGGAAATGAAGGTGAACCACAGGGGCTATAATTATACTTTTTCCCATCTGTGTGTG
TTGAGAAATCAGGATAAGAAATGCGTGCTGGATGATATTATTTCAGTGCTAGAGGATCTCAGGC
AGGCTGCCGTCTCCAGTAAGACAACAGCCAGGGTGCAAGTGAGGTATCCCAACACTAAATTAAA
GGATGGGAGGAACAGTTTTATTGGACATCAGCTGGGCGGGGTAGTGGAAGTACCCAACAGCAAG
GACCAGCGGGTCAAGTCTGCCAGAGCCATTCAAATCACCTACTACCTCCAGACCTACGGCTCTG
CCACCCAAGACCTCATAGGGGAGAAGTGGGAAAATGAGTTCTGTAAGCTCGTGGGGAAGCTCCA
GGAGGAGCACCAAGACCTCCAGCTCTACCCTCTCGCATCCTTCAGCCTCTGGAGAGACTTCCAT
AAGACCAGCATCCTTGCCAGGAGCAAGGTGCTGGTGAGCCTTGTGCTGATCCTGACCACAGCCA
CACTCTCCAGCTCCATGAAGGACTGTTTGCGCAGCAAGCCCTTCCTGGGCCTGCTGGGGGTGCT
CACTGTGTGCATCTCCCTCGTCACGGCTGCAGGGATCTTCTTCATCACGGATGGGAAGTACAAC
TCCACCCTGCTGGGAATCCCGTTCTTCGCCATGGGTCATGGGACAAAAGGTGTGTTTGAGCTTC
TGTCCGGATGGCGGAGAACTAAAGAGAATTTGCCCTTCAAAGACAGGGTGGCAGATGCCTACTC
AGATGTGATGGTTACCTACACCATGACCAGCTCCTTGTACTTTATCACCTTTGGAATGGGCGCC
AGTCCTTTCACAAACATAGAGGCTGTGAAAGTCTTCTGCCAGAACATGTGTGTCTCTATCCTGT
TGAACTACTTCTACATTTTCTCTTTCTTTGGCTCCTGCCTGGTTTTCGCTGGCCAACTGGAACA
AAACCGCTATCACAGCATCTTCTGCTGCAAGATCCCATCTGCAGAGTACCTGGACCGCAAGCCT
GTGTGGTTCCAGGCCGTGATGAGTGATGGACACCAGCAGGCATCCCACCACGAGACAGACCCCT
ACCAGCACCACTTCATCCAGCACTTCCTCCGAGAGCACTACAACGAGTGGATCACGAACATCTA
CGTGAAGCCATTTGTGGTTATCCTCTATCTCATTTATGCTTCCTTCTCCTTCATGGGGTGTTTG
CAGATCAGCGATGGAGCCAACATCATCAACCTCCTGGCCAGTGATTCTCCAAGTGTTTCCTATG
CCATGGTTCAGCAGAGATACTTCAGCAACTACAGCCCTGTGATAGGGTTCTACATCTACGAGCC
CCTTGAGTACTGGAATAGCAGTGTCCAGGAGGACCTTCAGAGGCTCTGCAGTGGCTTCACCACA
GTGTCCTGGGTGGACCAGTATTACCAGTTCCTGAAAACCAGTAACATCAGTGCCAGCAACAAAA
GTGACTTCATCAGTGTCCTACAAAGTTCATTTTTAAAAAAGCCAGAGTTCCAGCACTTCCGAAA
CGATATCATCTTCTCCAAAGCAGGGGATGAAAACAATATCATTGCTTCCCGCTTGTACCTGGTG
GCCAGGACTAGCAGAGACAAGCAAAAGGAAGTCATAGAAGTGCTGGAAAAGCTGAGACCCCTGT
CGCTTTCAAAGAGCATCCGGTTCATTGTGTTCAACCCCTCCTTTGTGTTCATGGACCACTACAG
CCTGTCTGTCACCGTGCCTGTGTTGATTGCAGGCTTTGGTGTGCTGCTGGTGTTAATCCTGACT
TTTTTCCTAGTAATCCACCCTTTGGGGAACTTCTGGCTCATTCTTAGCGTCACCTCAATTGAGC
TGGGTGTTCTGGGCTTAATGACCTTGTGGAATGTCGACATGGACTGCATTTCTATTTTGTGCCT
TATCTACACTTTAAACTTCGCCATTGACCACTGTGCACCCCTGCTTTACACGTTTGTATTAGCC
ACCGAGCACACCCGAACACAATGTATAAAAAGCTCACTGCAAGAGCATGGGACAGCCATTTTGC
AGAATATTACTTCTTTTCTTATTGGGTTGGTCCCCCTCTTCTTTGTGCCTTCAAACCTGACCTT
CACACTGTTCAAATGCTTGCTGCTCACCGGGGGTTGCACACTTCTGCACTGTTTTGTTATTTTA
CCTGTGTTCCTAACCTTTTTCCCTCCTTCCAAAAAGCACCACAAGAAAAAGAAACGTGCCAAAC
GAAAGGAGAGAGAGGAGATTGAATGCATAGAAATTCAAGAGAACCCTGATCATGTCACCACAGT
CTGAGGGCGGAGTTTTCCAGTATTTTTTTTTTCCAGTATTGCACAAGATGCAGGAGGAGGAGCT
CAGACCTCAGCAGCTTGGGCTGGCCAGGGGTAACAAGGCAAGTCAGACGAGAGCACCCCCGGGA
CAGTGTCTGCCTCTCAGGGGGAAGAGAGAATCAAACAGGGGGAATGTTCTTTGCAACCTTGTTC
TCCACGAAAGATAAATCTCTAGATGTGATCTTAGAGCTCTTCCAAGGAATGACAAAAGAAGCAA
CTGCTTTTCAAAAACAAAGCTTAGGAAAGATGGAGAAGAGAGTGAAGGTGGTCTCCAAATAGGA
AAAACAACTTAGGAAATACCCAAATTGCCATGTCACGTTCCATGGTTGCTTGTTGAACAAACAG
GTTGGTCAATGGAAACCTATGCACTTGGGAAGTACATATTTAATCCCGTCTAAACCAAAGGACT
T
hide sequence
|
| RefSeq Acc Id: |
XP_005389937 ⟸ XM_005389880 |
| - UniProtKB: |
A0A8C2VR62 (UniProtKB/TrEMBL) |
| - Sequence: |
CGRGLGVCVGRHPVLFLTVPAVLTIACGLSALRRFQPEGDLERLVAPSHSLAKIERSLAGSLFP
LDQSKSQLYSDLHTPGRYGRVILLSPPGDNVLLQAEGILQTHRAVLEMKVNHRGYNYTFSHLCV
LRNQDKKCVLDDIISVLEDLRQAAVSSKTTARVQVRYPNTKLKDGRNSFIGHQLGGVVEVPNSK
DQRVKSARAIQITYYLQTYGSATQDLIGEKWENEFCKLVGKLQEEHQDLQLYPLASFSLWRDFH
KTSILARSKVLVSLVLILTTATLSSSMKDCLRSKPFLGLLGVLTVCISLVTAAGIFFITDGKYN
STLLGIPFFAMGHGTKGVFELLSGWRRTKENLPFKDRVADAYSDVMVTYTMTSSLYFITFGMGA
SPFTNIEAVKVFCQNMCVSILLNYFYIFSFFGSCLVFAGQLEQNRYHSIFCCKIPSAEYLDRKP
VWFQAVMSDGHQQASHHETDPYQHHFIQHFLREHYNEWITNIYVKPFVVILYLIYASFSFMGCL
QISDGANIINLLASDSPSVSYAMVQQRYFSNYSPVIGFYIYEPLEYWNSSVQEDLQRLCSGFTT
VSWVDQYYQFLKTSNISASNKSDFISVLQSSFLKKPEFQHFRNDIIFSKAGDENNIIASRLYLV
ARTSRDKQKEVIEVLEKLRPLSLSKSIRFIVFNPSFVFMDHYSLSVTVPVLIAGFGVLLVLILT
FFLVIHPLGNFWLILSVTSIELGVLGLMTLWNVDMDCISILCLIYTLNFAIDHCAPLLYTFVLA
TEHTRTQCIKSSLQEHGTAILQNITSFLIGLVPLFFVPSNLTFTLFKCLLLTGGCTLLHCFVIL
PVFLTFFPPSKKHHKKKKRAKRKEREEIECIEIQENPDHVTTV
hide sequence
|
| RefSeq Acc Id: |
ENSCLAP00000016326 ⟸ ENSCLAT00000016490 |
Additional Information
|
|
