Plcxd3 (phosphatidylinositol specific phospholipase C X domain containing 3) - Rat Genome Database

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Gene: Plcxd3 (phosphatidylinositol specific phospholipase C X domain containing 3) Chinchilla lanigera
Analyze
Symbol: Plcxd3
Name: phosphatidylinositol specific phospholipase C X domain containing 3
RGD ID: 8920125
Description: ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN glutamatergic synapse (ortholog); synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phosphatidylinositol-specific phospholipase C, X domain containing 3; PI-PLC X domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542625,569,468 - 25,719,952 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542625,563,222 - 25,719,939 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Plcxd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542625,569,468 - 25,719,952 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542625,563,222 - 25,719,939 (-)NCBIChiLan1.0ChiLan1.0
PLCXD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38541,306,952 - 41,510,601 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl541,306,952 - 41,510,601 (-)EnsemblGRCh38hg38GRCh38
GRCh37541,307,054 - 41,510,703 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36541,342,805 - 41,546,487 (-)NCBINCBI36Build 36hg18NCBI36
Celera541,195,619 - 41,399,134 (-)NCBICelera
Cytogenetic Map5p13.1NCBI
HuRef541,259,522 - 41,463,634 (-)NCBIHuRef
CHM1_1541,309,079 - 41,512,527 (-)NCBICHM1_1
T2T-CHM13v2.0541,563,425 - 41,766,981 (-)NCBIT2T-CHM13v2.0
Plcxd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39154,404,973 - 4,605,067 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl154,404,973 - 4,605,035 (+)EnsemblGRCm39 Ensembl
GRCm38154,375,491 - 4,575,585 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl154,375,491 - 4,575,553 (+)EnsemblGRCm38mm10GRCm38
MGSCv37154,325,491 - 4,525,585 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36154,325,491 - 4,470,414 (+)NCBIMGSCv36mm8
Celera154,236,436 - 4,428,991 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map151.96NCBI
Plcxd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8255,294,597 - 55,473,968 (+)NCBIGRCr8
mRatBN7.2253,567,022 - 53,746,384 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl253,567,022 - 53,746,384 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx260,693,680 - 60,858,116 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0258,752,412 - 58,916,834 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0253,745,239 - 53,922,397 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0254,191,538 - 54,360,780 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl254,191,538 - 54,360,780 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0273,220,198 - 73,389,440 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4253,401,083 - 53,584,697 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1253,329,468 - 53,512,933 (+)NCBI
Celera249,231,797 - 49,405,738 (+)NCBICelera
Cytogenetic Map2q16NCBI
PLCXD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2468,837,058 - 69,037,309 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1566,990,680 - 67,190,940 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0568,885,917 - 69,079,834 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1573,928,078 - 74,123,570 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl573,928,317 - 74,121,546 (+)Ensemblpanpan1.1panPan2
PLCXD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1468,013,905 - 68,198,316 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl468,014,162 - 68,198,283 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha467,697,069 - 67,881,481 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0468,526,001 - 68,710,417 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl468,526,233 - 68,692,125 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1468,287,206 - 68,471,449 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0468,397,959 - 68,583,013 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0468,937,855 - 69,122,456 (+)NCBIUU_Cfam_GSD_1.0
Plcxd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213229,988,119 - 230,133,463 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365181,238,783 - 1,378,008 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365181,238,283 - 1,379,318 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLCXD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1626,165,588 - 26,347,135 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11626,144,798 - 26,348,578 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21627,361,652 - 27,534,255 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLCXD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1440,082,622 - 40,268,861 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl440,082,871 - 40,269,080 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607130,514,436 - 30,704,591 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plcxd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475913,473,653 - 13,671,795 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475913,473,863 - 13,678,067 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000013096   ⟹   ENSCLAP00000012946
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542625,569,468 - 25,719,952 (-)Ensembl
RefSeq Acc Id: XM_005386247   ⟹   XP_005386304
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542625,563,222 - 25,719,939 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005386304 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000012946
  ENSCLAP00000012946.1
Reference Protein Sequences
RefSeq Acc Id: XP_005386304   ⟸   XM_005386247
- UniProtKB: A0A8C2VB38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000012946   ⟸   ENSCLAT00000013096
Protein Domains
Phosphatidylinositol-specific phospholipase C X


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008935 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013096 ENTREZGENE
  ENSCLAT00000013096.1 UniProtKB/TrEMBL
Gene3D-CATH 3.20.20.190 UniProtKB/TrEMBL
InterPro PLC-like_Pdiesterase_TIM-brl UniProtKB/TrEMBL
  PLCXD1/2/3 UniProtKB/TrEMBL
  PLipase_C_PInositol-sp_X_dom UniProtKB/TrEMBL
NCBI Gene Plcxd3 ENTREZGENE
PANTHER PI-PLC X DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam PI-PLC-X UniProtKB/TrEMBL
PROSITE PIPLC_X_DOMAIN UniProtKB/TrEMBL
SMART PLCXc UniProtKB/TrEMBL
Superfamily-SCOP SSF51695 UniProtKB/TrEMBL
UniProt A0A8C2VB38 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Plcxd3  phosphatidylinositol specific phospholipase C X domain containing 3    phosphatidylinositol-specific phospholipase C, X domain containing 3  Symbol and/or name change 5135510 APPROVED