Pou5f2 (POU domain class 5, transcription factor 2)

Gene: Pou5f2 (POU domain class 5, transcription factor 2) Chinchilla lanigera

Analyze

Symbol:

Pou5f2

Name:

POU domain class 5, transcription factor 2

RGD ID:

8919912

Description:

ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); ASSOCIATED WITH Bosch-Boonstra-Schaaf optic atrophy syndrome (ortholog); familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

POU domain, class 5, transcription factor 2

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955418	18,493,622 - 18,494,871 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bosch-Boonstra-Schaaf optic atrophy syndrome (ISO)

familial adenomatous polyposis 1 (ISO)

genetic disease (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

sequence-specific DNA binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Pou5f2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955418	18,493,622 - 18,494,871 (+)	NCBI	ChiLan1.0	ChiLan1.0

POU5F2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	93,733,220 - 93,741,600 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	93,733,220 - 93,741,600 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	93,068,926 - 93,077,306 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	93,101,771 - 93,103,065 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	88,936,192 - 88,937,486 (-)	NCBI		Celera
Cytogenetic Map	5	q15	NCBI
HuRef	5	88,248,986 - 88,250,280 (-)	NCBI		HuRef
CHM1_1	5	92,508,680 - 92,509,974 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	94,217,284 - 94,225,664 (-)	NCBI		T2T-CHM13v2.0

Pou5f2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	78,173,021 - 78,174,415 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	78,173,021 - 78,174,414 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	78,024,902 - 78,026,296 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	78,024,902 - 78,026,295 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	78,164,163 - 78,165,557 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	78,488,449 - 78,489,843 (+)	NCBI		MGSCv36	mm8
Celera	13	80,312,747 - 80,314,141 (+)	NCBI		Celera
Cytogenetic Map	13	C1	NCBI
cM Map	13	41.38	NCBI

Pou5f2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	9,643,313 - 9,644,547 (+)	NCBI		GRCr8
mRatBN7.2	2	7,907,504 - 7,908,738 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	2	15,023,353 - 15,024,587 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	13,122,653 - 13,123,887 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	7,771,517 - 7,772,751 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	5,437,067 - 5,438,301 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	5,437,067 - 5,438,301 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	5,416,352 - 5,417,586 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	5,621,260 - 5,622,494 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	4,358,043 - 4,359,277 (+)	NCBI		Celera
Cytogenetic Map	2	q11	NCBI

POU5F2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	21,648,987 - 21,673,579 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	19,802,372 - 19,819,581 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	21,624,172 - 21,627,395 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	21,763,167 - 21,764,466 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	21,763,211 - 21,764,197 (+)	Ensembl	panpan1.1		panPan2

Pou5f2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	171,176,053 - 171,177,601 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936523	9,361,749 - 9,362,814 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936523	9,360,876 - 9,363,054 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

POU5F2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	2	100,602,508 - 100,624,006 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	104,251,887 - 104,260,866 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

POU5F2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	87,625,754 - 87,629,124 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	87,626,124 - 87,627,110 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666049	36,823,658 - 36,827,148 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pou5f2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624743	12,619,864 - 12,620,899 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624743	12,619,216 - 12,621,258 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005382262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01019168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01005065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005382262 ⟹ XP_005382319

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955418	18,493,622 - 18,494,871 (+)	NCBI

Sequence:

show sequence

TCGCGGGCCATCGGTTCCTACCAGACTCTTACTGGGGGTTGGCGTGCTACCCCATGGCTGGACA
CAGGCCCCCAAACTTACACCCTCCTCCAGACAGTGGAAGGGGTGGGTCTTCCGGACCCGGGCCG
ATGCCCCTGTGGGTTGATATTCCAAGCTGGTTGAGCGTCCAGGTGGCCCCTGGCAGAATGATGG
TCTGGCCAGGGATCGGCCCAACCATCTGCCGCAGCCCAGAGGTGTGGGGCGTCCCCTTGGGTAC
CCCGCCTTATGAATTCCTGGGCGGGGTGGGCCCCAGCAGAGCTGGCCAGGCAGAGCCCTGGCTC
CCGGGCCCCTCCGAGCCCACTGGCCTCAAACCCTACATTGCCCTGCTGAGCACCCCGAAGTTGG
CGCTGCCCGAGGACGTCTCGGCCATAGAGAAGGAGATGGCACAACTGGCCAAGGAGCTGCGGCA
GAAGAGGCTGACCCTGGGCTACTCACAGGCGGATGTGGGCGTCGCCGTGGGCGCGATGTTCGGC
GAGGTGCTCAGCCAGACGACCATCTGCCGCTTCGAGTCCCAGCAGCTCAGCCTGGCCAAAATGT
GGAAGGTGGGGCCGCTGCTGAAGATGTGGCTGGCGGAGATGAACGTCAAGAACCACCAAGGCCT
CTGGAAAATGGAGATGATTCTGCAGCAGGGCCGGAAGCGGAGGCAGGCGCACAGGGAGACAAGA
CTCCGGAACGACCTGGAGAGGCTCTTCCTGCAGTGTCCGCGCCCCACACCCCAGCAGATCAGCG
GCATCGCCGGGCACCTGCGCCTCCGGAAGGAGCTGGTCCGGATGTGGTTCTGCCTTCGGAACCA
GAGCTGCGGTCCAGGGACACCCCGTGCCCCGCGGCAGGAGATGGCAGCAGCGGCCGGGCTCCCT
TCCCCGGGGCCGCCCGTGTGCTTTCCCCTGGCACCTGGGCTGCATTTCGATCTCCTCCACTACG
GGGTGCCGTACCTTACCCCCCTGTACCGCTCCACGCCCTTTCCTGGAGGGGAAGTCCTTCTGTC
TGCCCCCGCTGCCTCCCTGGGCCTCCCCAGACTCTCCAGCTGAGGGGAGGGGGGAAAGAAAAGG
GGGAAGCCGGCGGCTCCCTGCGAGTTAGGAATACACAGCTGGGTGTGGGCTGGAGTTGTGGAAG
AAATTTGGGAGGGAAGTTTATTGATGCTTTGTGGTTTTCCCTTTACTTTAAAAAAAAACCCTGG
TTTTGGGTTTTAAGGTATATTACAATATACAAGT

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Protein Sequences


Protein RefSeqs	XP_005382319	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005382319 ⟸ XM_005382262

- Sequence:

show sequence

MAGHRPPNLHPPPDSGRGGSSGPGPMPLWVDIPSWLSVQVAPGRMMVWPGIGPTICRSPEVWGV
PLGTPPYEFLGGVGPSRAGQAEPWLPGPSEPTGLKPYIALLSTPKLALPEDVSAIEKEMAQLAK
ELRQKRLTLGYSQADVGVAVGAMFGEVLSQTTICRFESQQLSLAKMWKVGPLLKMWLAEMNVKN
HQGLWKMEMILQQGRKRRQAHRETRLRNDLERLFLQCPRPTPQQISGIAGHLRLRKELVRMWFC
LRNQSCGPGTPRAPRQEMAAAAGLPSPGPPVCFPLAPGLHFDLLHYGVPYLTPLYRSTPFPGGE
VLLSAPAASLGLPRLSS

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Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	Pou5f2	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar