Naxd (NAD(P)HX dehydratase) - Rat Genome Database

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Gene: Naxd (NAD(P)HX dehydratase) Chinchilla lanigera
Analyze
Symbol: Naxd
Name: NAD(P)HX dehydratase
RGD ID: 8916902
Description: ENCODES a protein that exhibits ATP-dependent NAD(P)H-hydrate dehydratase activity (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); combined oxidative phosphorylation deficiency 27 (ortholog); Disease Progression (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-dependent (S)-NAD(P)H-hydrate dehydratase; carbohydrate kinase domain containing; Carkd
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554042,029,539 - 2,047,211 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554042,028,560 - 2,049,638 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Naxd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554042,029,539 - 2,047,211 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554042,028,560 - 2,049,638 (-)NCBIChiLan1.0ChiLan1.0
NAXD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813110,615,460 - 110,639,996 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl13110,615,545 - 110,639,996 (+)EnsemblGRCh38hg38GRCh38
GRCh3713111,267,807 - 111,292,343 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3613110,066,009 - 110,090,344 (+)NCBINCBI36hg18NCBI36
Celera1392,114,056 - 92,138,392 (+)NCBI
Cytogenetic Map13q34NCBI
HuRef1391,867,122 - 91,891,659 (+)NCBIHuRef
CHM1_113111,236,259 - 111,260,790 (+)NCBICHM1_1
T2T-CHM13v2.013109,846,085 - 109,870,437 (+)NCBI
Naxd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39811,547,502 - 11,563,287 (+)NCBIGRCm39mm39
GRCm39 Ensembl811,547,506 - 11,564,960 (+)Ensembl
GRCm38811,497,506 - 11,513,287 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl811,497,506 - 11,514,960 (+)EnsemblGRCm38mm10GRCm38
MGSCv37811,497,506 - 11,513,287 (+)NCBIGRCm37mm9NCBIm37
MGSCv36811,497,574 - 11,513,256 (+)NCBImm8
Celera811,672,809 - 11,688,594 (+)NCBICelera
Cytogenetic Map8A1.1NCBI
Naxd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21677,986,148 - 78,004,200 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1677,987,726 - 78,004,192 (-)Ensembl
Rnor_6.01683,326,228 - 83,342,711 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1683,326,301 - 83,342,667 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01682,793,403 - 82,809,848 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41682,840,229 - 82,856,671 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1675,786,608 - 75,803,050 (-)NCBICelera
Cytogenetic Map16q12.5NCBI
NAXD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.113110,867,144 - 110,891,404 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13110,867,144 - 110,891,404 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01391,750,962 - 91,775,364 (+)NCBIMhudiblu_PPA_v0panPan3
NAXD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12258,889,324 - 58,901,346 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2258,881,927 - 58,900,382 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2258,591,342 - 58,612,939 (+)NCBI
ROS_Cfam_1.02259,503,624 - 59,525,269 (+)NCBI
ROS_Cfam_1.0 Ensembl2259,503,639 - 59,525,266 (+)Ensembl
UMICH_Zoey_3.12259,005,934 - 59,027,372 (+)NCBI
UNSW_CanFamBas_1.02258,997,609 - 59,019,261 (+)NCBI
UU_Cfam_GSD_1.02259,033,584 - 59,055,362 (+)NCBI
Naxd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945193,751,798 - 193,770,543 (+)NCBI
SpeTri2.0NW_0049364722,182,444 - 2,200,341 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAXD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1177,210,228 - 77,230,680 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11177,210,164 - 77,230,687 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21184,724,811 - 84,745,332 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NAXD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1388,845,564 - 88,870,176 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl388,845,487 - 88,868,411 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604645,580,962 - 45,606,108 (+)NCBIVero_WHO_p1.0
Naxd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247932,150,798 - 2,165,016 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247932,149,647 - 2,164,928 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000013163   ⟹   ENSCLAP00000013013
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554042,029,539 - 2,047,211 (-)Ensembl
RefSeq Acc Id: XM_005374003   ⟹   XP_005374060
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554042,028,560 - 2,049,638 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374060 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005374060   ⟸   XM_005374003
- Sequence:
RefSeq Acc Id: ENSCLAP00000013013   ⟸   ENSCLAT00000013163


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008979 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000013013.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013163.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1190.20 UniProtKB/TrEMBL
InterPro CARKD UniProtKB/TrEMBL
  Ribokinase-like UniProtKB/TrEMBL
NCBI Gene Carkd ENTREZGENE
Pfam Carb_kinase UniProtKB/TrEMBL
PROSITE YJEF_C_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF53613 UniProtKB/TrEMBL
TIGRFAMs yjeF_cterm UniProtKB/TrEMBL
UniProt A0A8C2VCV1_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Naxd  NAD(P)HX dehydratase  Carkd  carbohydrate kinase domain containing  Symbol and/or name change 5135510 APPROVED