Nek11 (NIMA related kinase 11) - Rat Genome Database

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Gene: Nek11 (NIMA related kinase 11) Chinchilla lanigera
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Symbol: Nek11
Name: NIMA related kinase 11
RGD ID: 8916098
Description: ENCODES a protein that exhibits ATP binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN intracellular signal transduction (ortholog); mitotic intra-S DNA damage checkpoint signaling (ortholog); regulation of mitotic cell cycle phase transition (ortholog); ASSOCIATED WITH alkaptonuria (ortholog); genetic disease (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NIMA-related kinase 11; serine/threonine-protein kinase Nek11
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555017,108,526 - 7,374,984 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555017,107,858 - 7,375,079 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (ISO)
nucleoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nek11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555017,108,526 - 7,374,984 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555017,107,858 - 7,375,079 (-)NCBIChiLan1.0ChiLan1.0
NEK11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383131,026,877 - 131,350,465 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3131,026,850 - 131,350,465 (+)EnsemblGRCh38hg38GRCh38
GRCh373130,745,721 - 131,069,309 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363132,228,417 - 132,551,993 (+)NCBINCBI36Build 36hg18NCBI36
Celera3129,170,940 - 129,494,974 (+)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3128,129,828 - 128,453,929 (+)NCBIHuRef
CHM1_13130,709,218 - 131,032,898 (+)NCBICHM1_1
T2T-CHM13v2.03133,770,580 - 134,094,242 (+)NCBIT2T-CHM13v2.0
Nek11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399105,039,355 - 105,272,723 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9105,039,355 - 105,272,723 (-)EnsemblGRCm39 Ensembl
GRCm389105,162,156 - 105,395,524 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9105,162,156 - 105,395,524 (-)EnsemblGRCm38mm10GRCm38
MGSCv379105,064,797 - 105,297,617 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369105,020,567 - 105,253,343 (-)NCBIMGSCv36mm8
Celera9104,752,212 - 104,992,782 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map956.61NCBI
Nek11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88114,646,010 - 114,905,242 (-)NCBIGRCr8
mRatBN7.28105,767,230 - 106,026,676 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8105,770,548 - 106,026,676 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8111,502,903 - 111,655,228 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08109,702,149 - 109,854,479 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08107,544,834 - 107,697,183 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08113,703,406 - 113,937,097 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8113,787,128 - 113,937,097 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08113,089,579 - 113,322,634 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48110,335,934 - 110,498,633 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18110,250,393 - 110,517,800 (-)NCBI
Celera8105,209,724 - 105,359,404 (-)NCBICelera
Cytogenetic Map8q32NCBI
NEK11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22128,983,467 - 129,311,793 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13128,988,218 - 129,313,179 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03128,111,202 - 128,434,781 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13135,433,828 - 135,757,221 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3135,433,828 - 135,757,221 (+)Ensemblpanpan1.1panPan2
NEK11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12328,244,116 - 28,496,595 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2328,247,451 - 28,442,816 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2328,216,697 - 28,471,321 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02328,751,145 - 29,004,266 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2328,751,332 - 28,994,086 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12328,447,449 - 28,700,030 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02328,506,210 - 28,759,470 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02328,755,881 - 29,011,340 (+)NCBIUU_Cfam_GSD_1.0
Nek11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560267,723,842 - 68,025,418 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365294,487,656 - 4,785,912 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365294,484,397 - 4,785,902 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEK11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl131,145,284 - 1,435,652 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1131,145,225 - 1,435,690 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213983,600 - 1,092,961 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NEK11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11558,884,879 - 59,178,575 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1558,884,771 - 59,175,470 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604131,900,506 - 32,196,526 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nek11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247307,011,227 - 7,346,903 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247307,010,314 - 7,343,072 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005406852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005406853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005406856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005406857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013505736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01064204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01064214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDK01060055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCLAT00000005828   ⟹   ENSCLAP00000005727
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555017,108,526 - 7,373,582 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000005829   ⟹   ENSCLAP00000005728
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555017,302,685 - 7,374,984 (-)Ensembl
RefSeq Acc Id: XM_005406852   ⟹   XP_005406909
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555017,107,858 - 7,374,984 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005406853   ⟹   XP_005406910
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555017,107,858 - 7,374,984 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005406856   ⟹   XP_005406913
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555017,107,858 - 7,375,064 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005406857   ⟹   XP_005406914
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555017,107,858 - 7,374,975 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505736   ⟹   XP_013361190
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555017,107,858 - 7,375,079 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005406913   ⟸   XM_005406856
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005406914   ⟸   XM_005406857
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005406910   ⟸   XM_005406853
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UXI8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005406909   ⟸   XM_005406852
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UXI8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013361190   ⟸   XM_013505736
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UXI8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000005728   ⟸   ENSCLAT00000005829
RefSeq Acc Id: ENSCLAP00000005727   ⟸   ENSCLAT00000005828
Protein Domains
Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004059 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000005828.1 UniProtKB/TrEMBL
  ENSCLAT00000005829.1 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
NCBI Gene Nek11 ENTREZGENE
PANTHER CAMK FAMILY PROTEIN KINASE UniProtKB/TrEMBL
  NIMA-RELATED KINASE 11 UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A8C2UXI8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UZV4_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Nek11  NIMA related kinase 11    NIMA-related kinase 11  Symbol and/or name change 5135510 APPROVED