Atp23 (ATP23 metallopeptidase and ATP synthase assembly factor homolog) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Atp23 (ATP23 metallopeptidase and ATP synthase assembly factor homolog) Chinchilla lanigera
Analyze
Symbol: Atp23
Name: ATP23 metallopeptidase and ATP synthase assembly factor homolog
RGD ID: 8915934
Description: FOUND IN cell junction (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mitochondrial inner membrane protease ATP23 homolog; XRCC6 binding protein 1; Xrcc6bp1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554585,632,165 - 5,651,519 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554585,632,679 - 5,650,270 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554585,632,165 - 5,651,519 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554585,632,679 - 5,650,270 (+)NCBIChiLan1.0ChiLan1.0
ATP23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381257,941,567 - 57,959,148 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1257,906,039 - 57,959,148 (+)EnsemblGRCh38hg38GRCh38
GRCh371258,335,350 - 58,352,931 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361256,621,712 - 56,637,319 (+)NCBINCBI36Build 36hg18NCBI36
Celera1257,994,050 - 58,009,658 (+)NCBICelera
Cytogenetic Map12q14.1NCBI
HuRef1255,371,766 - 55,387,373 (+)NCBIHuRef
CHM1_11258,303,225 - 58,318,831 (+)NCBICHM1_1
T2T-CHM13v2.01257,909,929 - 57,927,510 (+)NCBIT2T-CHM13v2.0
Atp23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910126,703,698 - 126,737,893 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10126,704,296 - 126,737,224 (-)EnsemblGRCm39 Ensembl
GRCm3810126,867,829 - 126,902,024 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10126,868,427 - 126,901,355 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710126,305,483 - 126,338,427 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610126,271,379 - 126,304,304 (-)NCBIMGSCv36mm8
Celera10129,259,555 - 129,292,365 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1073.84NCBI
Atp23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8764,600,100 - 64,615,240 (-)NCBIGRCr8
mRatBN7.2762,714,752 - 62,729,893 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl762,714,785 - 62,729,862 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx764,604,055 - 64,619,125 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0766,806,469 - 66,821,534 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0766,607,409 - 66,622,488 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0770,183,625 - 70,198,655 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl770,183,625 - 70,198,655 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0770,360,825 - 70,375,828 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera759,862,752 - 59,877,891 (-)NCBICelera
Cytogenetic Map7q22NCBI
ATP23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21036,376,898 - 36,399,163 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11236,373,668 - 36,395,933 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01230,969,266 - 30,985,043 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11231,231,287 - 31,247,026 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1231,231,287 - 31,247,020 (-)Ensemblpanpan1.1panPan2
ATP23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1101,981,577 - 1,994,972 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl101,981,685 - 1,994,831 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha102,047,814 - 2,061,120 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0101,994,215 - 2,007,526 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl101,994,051 - 2,007,390 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1101,971,905 - 1,985,084 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0102,214,089 - 2,227,395 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0102,340,087 - 2,353,308 (+)NCBIUU_Cfam_GSD_1.0
Atp23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494556,795,633 - 56,813,158 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366462,060,552 - 2,074,687 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366462,057,112 - 2,074,382 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl523,233,895 - 23,276,036 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1523,176,854 - 23,276,251 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2524,934,289 - 24,977,755 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP23
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11153,854,424 - 53,868,494 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1153,854,418 - 53,868,628 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037192,092,644 - 192,106,729 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp23
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248029,993,242 - 10,010,923 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248029,994,788 - 10,066,927 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000015610   ⟹   ENSCLAP00000015448
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554585,632,165 - 5,651,519 (+)Ensembl
RefSeq Acc Id: XM_013521026   ⟹   XP_013376480
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554585,632,679 - 5,650,270 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013376480 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015448
  ENSCLAP00000015448.1
Reference Protein Sequences
RefSeq Acc Id: XP_013376480   ⟸   XM_013521026
- UniProtKB: A0A8C2VP38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000015448   ⟸   ENSCLAT00000015610


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010629 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015610 ENTREZGENE
  ENSCLAT00000015610.1 UniProtKB/TrEMBL
InterPro Peptidase_M76_ATP23 UniProtKB/TrEMBL
NCBI Gene Xrcc6bp1 ENTREZGENE
PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE ATP23 HOMOLOG UniProtKB/TrEMBL
  PTHR21711 UniProtKB/TrEMBL
Pfam Peptidase_M76 UniProtKB/TrEMBL
UniProt A0A8C2VP38 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-26 Atp23  ATP23 metallopeptidase and ATP synthase assembly factor homolog  Xrcc6bp1  XRCC6 binding protein 1  Symbol and/or name change 5135510 APPROVED