Ppp2r5e (protein phosphatase 2 regulatory subunit B'epsilon) - Rat Genome Database

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Gene: Ppp2r5e (protein phosphatase 2 regulatory subunit B'epsilon) Chinchilla lanigera
Analyze
Symbol: Ppp2r5e
Name: protein phosphatase 2 regulatory subunit B'epsilon
RGD ID: 8914700
Description: ASSOCIATED WITH Chromosomal Instability (ortholog); genetic disease (ortholog); Micronuclei, Chromosome-Defective (ortholog); FOUND IN cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554666,263,338 - 6,420,685 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554666,263,338 - 6,420,685 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ppp2r5e
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554666,263,338 - 6,420,685 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554666,263,338 - 6,420,685 (+)NCBIChiLan1.0ChiLan1.0
PPP2R5E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381463,371,364 - 63,543,377 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1463,371,364 - 63,543,377 (-)EnsemblGRCh38hg38GRCh38
GRCh371463,838,082 - 64,010,095 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361462,911,108 - 63,079,832 (-)NCBINCBI36Build 36hg18NCBI36
Build 341462,911,107 - 63,079,832NCBI
Celera1443,892,051 - 44,060,782 (-)NCBICelera
Cytogenetic Map14q23.2NCBI
HuRef1444,007,943 - 44,177,149 (-)NCBIHuRef
CHM1_11463,780,369 - 63,949,091 (-)NCBICHM1_1
T2T-CHM13v2.01457,578,735 - 57,750,775 (-)NCBIT2T-CHM13v2.0
Ppp2r5e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391275,496,237 - 75,643,064 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1275,497,655 - 75,643,019 (-)EnsemblGRCm39 Ensembl
GRCm381275,449,463 - 75,596,237 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1275,450,881 - 75,596,245 (-)EnsemblGRCm38mm10GRCm38
MGSCv371276,551,868 - 76,697,187 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361276,369,721 - 76,515,040 (-)NCBIMGSCv36mm8
Celera1276,535,179 - 76,696,642 (-)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1232.75NCBI
Ppp2r5e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8699,904,569 - 100,053,672 (-)NCBIGRCr8
mRatBN7.2694,168,846 - 94,317,872 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl694,168,846 - 94,317,872 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx694,561,718 - 94,711,228 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0694,860,234 - 95,009,753 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0694,289,097 - 94,438,615 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0698,417,974 - 98,567,016 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl698,417,974 - 98,566,966 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06107,836,104 - 107,985,250 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4698,047,316 - 98,197,549 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1698,053,853 - 98,201,066 (-)NCBI
Celera692,596,832 - 92,745,242 (-)NCBICelera
Cytogenetic Map6q24NCBI
PPP2R5E
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21564,477,774 - 64,648,588 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11463,694,290 - 63,865,548 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01443,947,793 - 44,119,020 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11462,207,182 - 62,373,711 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1462,207,192 - 62,373,711 (-)Ensemblpanpan1.1panPan2
PPP2R5E
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1837,945,350 - 38,088,322 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl837,945,331 - 38,088,110 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha837,663,916 - 37,780,994 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0838,172,395 - 38,314,626 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl838,172,672 - 38,314,720 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1837,789,055 - 37,931,745 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0837,868,630 - 38,004,310 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0838,221,858 - 38,364,575 (-)NCBIUU_Cfam_GSD_1.0
Ppp2r5e
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864066,818,311 - 66,961,292 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364957,230,786 - 7,372,556 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364957,230,405 - 7,372,525 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP2R5E
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1194,505,025 - 194,656,164 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11194,505,535 - 194,653,302 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21216,594,665 - 216,628,082 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PPP2R5E
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12440,548,986 - 40,730,451 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2440,553,635 - 40,633,392 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605328,759,264 - 28,930,715 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp2r5e
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473437,510,255 - 37,675,482 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473437,509,711 - 37,678,807 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000012041   ⟹   ENSCLAP00000011901
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554666,263,338 - 6,420,685 (+)Ensembl
RefSeq Acc Id: XM_005399153   ⟹   XP_005399210
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554666,263,338 - 6,420,685 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005399154   ⟹   XP_005399211
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554666,263,338 - 6,420,685 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521973   ⟹   XP_013377427
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554666,301,102 - 6,420,685 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005399210 (Get FASTA)   NCBI Sequence Viewer  
  XP_005399211 (Get FASTA)   NCBI Sequence Viewer  
  XP_013377427 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011901
  ENSCLAP00000011901.1
Reference Protein Sequences
RefSeq Acc Id: XP_005399210   ⟸   XM_005399153
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V8N6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005399211   ⟸   XM_005399154
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V8N6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377427   ⟸   XM_013521973
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000011901   ⟸   ENSCLAT00000012041


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008211 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012041 ENTREZGENE
  ENSCLAT00000012041.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  PP2A_B56 UniProtKB/TrEMBL
NCBI Gene Ppp2r5e ENTREZGENE
PANTHER PTHR10257 UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 56 KDA REGULATORY SUBUNIT EPSILON ISOFORM UniProtKB/TrEMBL
Pfam B56 UniProtKB/TrEMBL
PIRSF PP2A_B56 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C2V8N6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Ppp2r5e  protein phosphatase 2 regulatory subunit B'epsilon    protein phosphatase 2, regulatory subunit B', epsilon isoform  Symbol and/or name change 5135510 APPROVED