Znf536 (zinc finger protein 536) - Rat Genome Database

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Gene: Znf536 (zinc finger protein 536) Chinchilla lanigera
Analyze
Symbol: Znf536
Name: zinc finger protein 536
RGD ID: 8913288
Description: ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); retinoic acid-responsive element binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of neuron differentiation (ortholog); negative regulation of retinoic acid receptor signaling pathway (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog); High Myopia (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554687,194,251 - 7,291,945 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554687,049,301 - 7,488,706 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf536
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554687,194,251 - 7,291,945 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554687,049,301 - 7,488,706 (-)NCBIChiLan1.0ChiLan1.0
ZNF536
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381930,225,592 - 30,713,586 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1930,224,891 - 30,713,586 (+)EnsemblGRCh38hg38GRCh38
GRCh371930,716,499 - 31,204,493 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361935,555,168 - 35,740,805 (+)NCBINCBI36Build 36hg18NCBI36
Build 341935,555,167 - 35,740,805NCBI
Celera1927,557,080 - 27,742,730 (+)NCBICelera
Cytogenetic Map19q12NCBI
HuRef1927,369,510 - 27,553,696 (+)NCBIHuRef
CHM1_11930,863,630 - 31,050,298 (+)NCBICHM1_1
T2T-CHM13v2.01932,746,044 - 33,234,121 (+)NCBIT2T-CHM13v2.0
Zfp536
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39737,017,448 - 37,473,733 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl737,017,449 - 37,473,066 (-)EnsemblGRCm39 Ensembl
GRCm38737,318,023 - 37,774,039 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl737,318,024 - 37,773,641 (-)EnsemblGRCm38mm10GRCm38
MGSCv37738,264,128 - 38,554,771 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36737,187,869 - 37,478,512 (-)NCBIMGSCv36mm8
Celera732,626,245 - 32,923,537 (-)NCBICelera
Cytogenetic Map7B2- B3NCBI
cM Map724.57NCBI
Zfp536
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8199,137,133 - 99,600,379 (-)NCBIGRCr8
mRatBN7.2190,000,359 - 90,463,423 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl190,002,858 - 90,462,990 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0193,689,114 - 94,155,457 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl193,851,454 - 93,949,187 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0194,797,493 - 95,255,540 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4189,794,391 - 90,036,876 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera184,340,585 - 84,798,221 (-)NCBICelera
Cytogenetic Map1q21NCBI
ZNF536
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22036,197,660 - 36,687,157 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11938,194,756 - 38,684,140 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01927,145,499 - 27,634,609 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11935,900,554 - 36,384,099 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1935,904,282 - 36,387,805 (+)Ensemblpanpan1.1panPan2
ZNF536
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11120,975,686 - 121,374,312 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1120,975,937 - 121,374,580 (-)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1120,472,420 - 120,553,677 (-)NCBIDog10K_Boxer_Tasha
Dog10K_Boxer_Tasha1120,376,244 - 120,441,858 (-)NCBIDog10K_Boxer_Tasha
Dog10K_Boxer_Tasha1120,625,391 - 120,640,778 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01121,572,215 - 122,002,389 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1121,572,902 - 122,002,219 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11121,155,554 - 121,397,292 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01120,761,350 - 121,003,367 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01121,825,108 - 122,253,291 (-)NCBIUU_Cfam_GSD_1.0
Znf536
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093496,444,687 - 6,879,614 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365704,909,567 - 5,144,970 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365704,768,842 - 5,201,254 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF536
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl640,292,951 - 40,615,673 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1640,291,360 - 40,773,616 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2635,981,495 - 36,157,031 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF536
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1625,275,439 - 25,759,834 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl625,494,973 - 25,599,359 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660732,818,314 - 3,305,073 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf536
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247945,359,695 - 5,602,220 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247945,305,029 - 5,744,694 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005400096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005400097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005400098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005400099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005400100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005400101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005400102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013522536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013522537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013522538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01051994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01051995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01051996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01051997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01051998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01051999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01052000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01052001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01052002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDF01016003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000021854   ⟹   ENSCLAP00000021651
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554687,194,251 - 7,291,945 (-)Ensembl
RefSeq Acc Id: XM_005400096   ⟹   XP_005400153
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554687,049,301 - 7,488,286 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005400097   ⟹   XP_005400154
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554687,049,301 - 7,488,286 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005400098   ⟹   XP_005400155
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554687,049,301 - 7,488,706 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005400099   ⟹   XP_005400156
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554687,049,301 - 7,488,286 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005400100   ⟹   XP_005400157
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554687,049,301 - 7,432,769 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005400101   ⟹   XP_005400158
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554687,049,301 - 7,488,286 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005400102   ⟹   XP_005400159
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554687,195,072 - 7,488,285 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522536   ⟹   XP_013377990
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554687,049,301 - 7,488,286 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522537   ⟹   XP_013377991
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554687,049,301 - 7,488,286 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522538   ⟹   XP_013377992
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554687,049,301 - 7,484,909 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005400155   ⟸   XM_005400098
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VWF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005400156   ⟸   XM_005400099
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VWF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005400154   ⟸   XM_005400097
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VWF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005400158   ⟸   XM_005400101
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VWF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005400153   ⟸   XM_005400096
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VWF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005400157   ⟸   XM_005400100
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VWF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005400159   ⟸   XM_005400102
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VWF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377991   ⟸   XM_013522537
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VWF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377990   ⟸   XM_013522536
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VWF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377992   ⟸   XM_013522538
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VWF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000021651   ⟸   ENSCLAT00000021854
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014818 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000021854 ENTREZGENE
  ENSCLAT00000021854.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf536 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 536 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_assoc UniProtKB/TrEMBL
  zf-H2C2_5 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A8C2VWF3 ENTREZGENE, UniProtKB/TrEMBL