Slc4a8 (solute carrier family 4 member 8) - Rat Genome Database

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Gene: Slc4a8 (solute carrier family 4 member 8) Chinchilla lanigera
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Symbol: Slc4a8
Name: solute carrier family 4 member 8
RGD ID: 8912328
Description: ENCODES a protein that exhibits bicarbonate transmembrane transporter activity (ortholog); chloride transmembrane transporter activity (ortholog); sodium ion transmembrane transporter activity (ortholog); INVOLVED IN bicarbonate transport (ortholog); chloride transmembrane transport (ortholog); modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH prediabetes syndrome (ortholog); FOUND IN asymmetric synapse (ortholog); axon terminus (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: electroneutral sodium bicarbonate exchanger 1; solute carrier family 4, sodium bicarbonate cotransporter, member 8
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555471,896,862 - 1,969,975 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555471,896,597 - 1,975,285 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Slc4a8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555471,896,862 - 1,969,975 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555471,896,597 - 1,975,285 (+)NCBIChiLan1.0ChiLan1.0
SLC4A8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1251,391,317 - 51,515,763 (+)EnsemblGRCh38hg38GRCh38
GRCh381251,391,317 - 51,515,763 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371251,785,230 - 51,909,547 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361250,104,861 - 50,189,247 (+)NCBINCBI36hg18NCBI36
Build 341250,105,023 - 50,177,915NCBI
Celera1250,620,062 - 50,705,110 (+)NCBI
Cytogenetic Map12q13.13NCBI
HuRef1248,818,058 - 48,942,408 (+)NCBIHuRef
CHM1_11251,751,635 - 51,876,068 (+)NCBICHM1_1
Slc4a8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915100,659,628 - 100,721,852 (+)NCBIGRCm39mm39
GRCm39 Ensembl15100,659,628 - 100,721,849 (+)Ensembl
GRCm3815100,761,747 - 100,823,971 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15100,761,747 - 100,823,968 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715100,592,178 - 100,654,402 (+)NCBIGRCm37mm9NCBIm37
MGSCv3615100,589,836 - 100,643,959 (+)NCBImm8
Celera15102,908,446 - 102,971,080 (+)NCBICelera
Cytogenetic Map15F1NCBI
Slc4a8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27131,861,284 - 131,937,963 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl7131,864,102 - 131,931,051 (+)Ensembl
Rnor_6.07142,397,352 - 142,467,398 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7142,397,371 - 142,464,158 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07140,201,544 - 140,271,679 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47139,230,085 - 139,575,631 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17139,306,521 - 139,652,068 (+)NCBI
Celera7128,340,100 - 128,399,333 (+)NCBICelera
Cytogenetic Map7q36NCBI
SLC4A8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11238,126,246 - 38,214,036 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1238,134,574 - 38,214,036 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01237,243,593 - 37,329,083 (-)NCBIMhudiblu_PPA_v0panPan3
SLC4A8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1273,398,776 - 3,460,562 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl273,403,804 - 3,460,583 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2742,783,879 - 42,858,653 (+)NCBI
ROS_Cfam_1.0273,392,807 - 3,467,680 (-)NCBI
UMICH_Zoey_3.1273,411,808 - 3,486,454 (-)NCBI
UNSW_CanFamBas_1.0273,398,150 - 3,473,015 (-)NCBI
UU_Cfam_GSD_1.02743,181,640 - 43,256,519 (+)NCBI
Slc4a8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494564,104,543 - 64,176,618 (-)NCBI
SpeTri2.0NW_0049365128,988,212 - 9,060,287 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC4A8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl516,842,710 - 16,977,611 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1516,842,667 - 16,921,669 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2517,478,543 - 17,580,590 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC4A8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11147,622,602 - 47,704,975 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1147,622,640 - 47,703,215 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037198,388,160 - 198,471,870 (-)NCBIVero_WHO_p1.0
Slc4a8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624816714,766 - 821,340 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000002527   ⟹   ENSCLAP00000002475
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555471,896,862 - 1,969,975 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000002528   ⟹   ENSCLAP00000002476
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555471,896,862 - 1,969,975 (+)Ensembl
RefSeq Acc Id: XM_005415404   ⟹   XP_005415461
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555471,896,597 - 1,975,285 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005415461 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005415461   ⟸   XM_005415404
- Sequence:
RefSeq Acc Id: ENSCLAP00000002476   ⟸   ENSCLAT00000002528
RefSeq Acc Id: ENSCLAP00000002475   ⟸   ENSCLAT00000002527


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001794 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000002476 ENTREZGENE
Ensembl Transcript ENSCLAT00000002528 ENTREZGENE
NCBI Gene Slc4a8 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Slc4a8  solute carrier family 4 member 8    solute carrier family 4, sodium bicarbonate cotransporter, member 8  Symbol and/or name change 5135510 APPROVED