Cr2 (complement C3d receptor 2) - Rat Genome Database

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Gene: Cr2 (complement C3d receptor 2) Chinchilla lanigera
Analyze
Symbol: Cr2
Name: complement C3d receptor 2
RGD ID: 8907517
Description: ENCODES a protein that exhibits complement binding (ortholog); complement receptor activity (ortholog); DNA binding (ortholog); INVOLVED IN B cell activation (ortholog); B cell differentiation (ortholog); B cell proliferation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); common variable immunodeficiency (ortholog); common variable immunodeficiency 2 (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: complement component (3d/Epstein Barr virus) receptor 2; complement component 3d receptor 2; complement receptor type 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540642,876,966 - 42,911,564 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540642,877,041 - 42,910,970 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline

Genomics

Comparative Map Data
Cr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540642,876,966 - 42,911,564 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540642,877,041 - 42,910,970 (+)NCBIChiLan1.0ChiLan1.0
CR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381207,454,328 - 207,489,892 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1207,453,024 - 207,489,895 (+)EnsemblGRCh38hg38GRCh38
GRCh371207,627,673 - 207,663,237 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361205,694,293 - 205,729,863 (+)NCBINCBI36Build 36hg18NCBI36
Build 341204,016,064 - 204,051,633NCBI
Celera1180,876,666 - 180,912,267 (+)NCBICelera
Cytogenetic Map1q32.2NCBI
HuRef1178,320,710 - 178,356,313 (+)NCBIHuRef
CHM1_11208,900,385 - 208,935,976 (+)NCBICHM1_1
T2T-CHM13v2.01206,719,629 - 206,755,209 (+)NCBIT2T-CHM13v2.0
Cr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,819,120 - 194,859,096 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1194,819,119 - 194,859,024 (-)EnsemblGRCm39 Ensembl
GRCm381195,136,811 - 195,176,880 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1195,136,811 - 195,176,716 (-)EnsemblGRCm38mm10GRCm38
MGSCv371196,963,005 - 197,002,909 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361196,840,394 - 196,877,439 (-)NCBIMGSCv36mm8
Celera1202,035,969 - 202,075,750 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map198.44NCBI
Cr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813109,207,034 - 109,244,980 (-)NCBIGRCr8
mRatBN7.213106,678,579 - 106,716,595 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13106,685,413 - 106,716,235 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13109,202,762 - 109,233,397 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013110,586,602 - 110,617,233 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013107,811,075 - 107,841,707 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013113,890,274 - 113,927,824 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13113,890,272 - 113,927,877 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013118,580,480 - 118,618,039 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413111,078,338 - 111,113,667 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113111,281,069 - 111,300,233 (-)NCBI
Celera13106,107,601 - 106,138,227 (-)NCBICelera
Cytogenetic Map13q27NCBI
CR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2141,889,483 - 41,926,416 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1141,855,514 - 41,892,457 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01183,052,798 - 183,088,385 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11187,330,483 - 187,366,069 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1187,330,483 - 187,366,069 (+)Ensemblpanpan1.1panPan2
Cr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934468,006,478 - 68,043,276 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365575,246,770 - 5,256,608 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12521,914,690 - 21,954,244 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2521,919,393 - 21,953,659 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605522,536,015 - 22,575,130 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248074,152,230 - 4,179,211 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248074,149,472 - 4,179,269 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000018232   ⟹   ENSCLAP00000018054
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540642,876,966 - 42,911,564 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000018233   ⟹   ENSCLAP00000018055
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540642,876,966 - 42,911,564 (+)Ensembl
RefSeq Acc Id: XM_005375433   ⟹   XP_005375490
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540642,877,041 - 42,910,970 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005375490 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000018054.1
  ENSCLAP00000018055
  ENSCLAP00000018055.1
RefSeq Acc Id: XP_005375490   ⟸   XM_005375433
- UniProtKB: A0A8C2VVE2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000018054   ⟸   ENSCLAT00000018232
Ensembl Acc Id: ENSCLAP00000018055   ⟸   ENSCLAT00000018233
Protein Domains
Sushi


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012385 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018232.1 UniProtKB/TrEMBL
  ENSCLAT00000018233 ENTREZGENE
  ENSCLAT00000018233.1 UniProtKB/TrEMBL
Gene3D-CATH Complement Module, domain 1 UniProtKB/TrEMBL
InterPro SEZ6_CSMD_C4BPB_Regulators UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP_dom UniProtKB/TrEMBL
NCBI Gene Cr2 ENTREZGENE
PANTHER PROTEIN CBR-CLEC-78 UniProtKB/TrEMBL
  PROTEIN CBR-CLEC-78 UniProtKB/TrEMBL
Pfam Sushi UniProtKB/TrEMBL
PROSITE SUSHI UniProtKB/TrEMBL
SMART CCP UniProtKB/TrEMBL
Superfamily-SCOP SSF57535 UniProtKB/TrEMBL
UniProt A0A8C2VVE2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Cr2  complement C3d receptor 2    complement component 3d receptor 2  Symbol and/or name change 5135510 APPROVED
2016-08-03 Cr2  complement component 3d receptor 2    complement component (3d/Epstein Barr virus) receptor 2  Symbol and/or name change 5135510 APPROVED