Ctnna2 (catenin alpha 2) - Rat Genome Database

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Gene: Ctnna2 (catenin alpha 2) Chinchilla lanigera
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Symbol: Ctnna2
Name: catenin alpha 2
RGD ID: 8907057
Description: ENCODES a protein that exhibits actin filament binding (ortholog); identical protein binding (ortholog); INVOLVED IN axonogenesis (ortholog); brain morphogenesis (ortholog); dendrite morphogenesis (ortholog); ASSOCIATED WITH Complex Cortical Dysplasia with Other Brain Malformations 9 (ortholog); hereditary breast ovarian cancer syndrome (ortholog); lissencephaly (ortholog); FOUND IN adherens junction (ortholog); axon (ortholog); basolateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: catenin (cadherin-associated protein), alpha 2; catenin alpha-2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554245,986,073 - 6,911,826 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554245,985,170 - 7,055,830 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Ctnna2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554245,986,073 - 6,911,826 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554245,985,170 - 7,055,830 (-)NCBIChiLan1.0ChiLan1.0
CTNNA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38279,185,377 - 80,648,780 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl279,185,231 - 80,648,861 (+)EnsemblGRCh38hg38GRCh38
GRCh37279,412,503 - 80,875,905 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36279,593,634 - 80,729,416 (+)NCBINCBI36hg18NCBI36
Build 34279,651,780 - 80,787,562NCBI
Celera279,568,796 - 80,704,725 (+)NCBI
Cytogenetic Map2p12NCBI
HuRef279,475,616 - 80,610,857 (+)NCBIHuRef
CHM1_1279,669,347 - 80,805,984 (+)NCBICHM1_1
T2T-CHM13v2.0279,185,703 - 80,649,017 (+)NCBI
Ctnna2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39676,858,620 - 77,956,798 (-)NCBIGRCm39mm39
GRCm39 Ensembl676,858,620 - 77,956,682 (-)Ensembl
GRCm38676,881,637 - 77,979,815 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl676,881,637 - 77,979,699 (-)EnsemblGRCm38mm10GRCm38
MGSCv37676,831,631 - 77,929,661 (-)NCBIGRCm37mm9NCBIm37
MGSCv36676,811,161 - 77,909,097 (-)NCBImm8
Celera678,902,485 - 80,006,681 (-)NCBICelera
Cytogenetic Map6C3NCBI
cM Map633.54NCBI
Ctnna2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24109,293,978 - 110,443,413 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl4109,293,978 - 110,443,522 (-)Ensembl
Rnor_6.04107,880,611 - 109,042,724 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4107,881,826 - 108,008,484 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04172,586,790 - 173,745,983 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44110,747,551 - 111,922,482 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14111,016,614 - 112,035,932 (-)NCBI
Celera498,339,981 - 99,476,551 (-)NCBICelera
Cytogenetic Map4q33NCBI
CTNNA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A81,158,206 - 82,308,244 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A81,303,559 - 82,307,258 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02A79,594,694 - 80,745,885 (+)NCBIMhudiblu_PPA_v0panPan3
CTNNA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11743,472,346 - 44,504,881 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1743,472,923 - 44,557,766 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1743,168,024 - 44,195,314 (-)NCBI
ROS_Cfam_1.01744,284,748 - 45,372,518 (-)NCBI
UMICH_Zoey_3.11743,368,220 - 44,455,587 (-)NCBI
UNSW_CanFamBas_1.01743,410,252 - 44,491,113 (-)NCBI
UU_Cfam_GSD_1.01743,907,412 - 44,995,361 (-)NCBI
Ctnna2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244062924,466,584 - 5,532,415 (-)NCBI
SpeTri2.0NW_0049365565,205,481 - 6,271,304 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTNNA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl363,205,084 - 63,455,471 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1363,205,073 - 64,417,990 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2366,285,690 - 66,567,714 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CTNNA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11426,579,012 - 27,729,581 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1426,578,896 - 26,836,423 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604584,556,698 - 85,727,504 (+)NCBIVero_WHO_p1.0
Ctnna2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474922,333,710 - 23,412,593 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462474922,332,750 - 23,546,165 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005385453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005385454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01024414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01024415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01024416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01024417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01024418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01024419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01024420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01024421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01024422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01024423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01024424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01024425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01024426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01024427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01024428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01024429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01024430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01024431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01024432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDF01085911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000020272   ⟹   ENSCLAP00000020079
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554245,986,073 - 6,911,826 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000020273   ⟹   ENSCLAP00000020080
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554245,986,073 - 6,911,826 (-)Ensembl
RefSeq Acc Id: XM_005385453   ⟹   XP_005385510
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554245,985,170 - 7,055,830 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005385454   ⟹   XP_005385511
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554245,985,170 - 7,055,829 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005385510 (Get FASTA)   NCBI Sequence Viewer  
  XP_005385511 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005385511   ⟸   XM_005385454
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005385510   ⟸   XM_005385453
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000020079   ⟸   ENSCLAT00000020272
RefSeq Acc Id: ENSCLAP00000020080   ⟸   ENSCLAT00000020273


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013755 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000020079 ENTREZGENE
  ENSCLAP00000020079.1 UniProtKB/TrEMBL
  ENSCLAP00000020080 ENTREZGENE
  ENSCLAP00000020080.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020272 ENTREZGENE
  ENSCLAT00000020272.1 UniProtKB/TrEMBL
  ENSCLAT00000020273 ENTREZGENE
  ENSCLAT00000020273.1 UniProtKB/TrEMBL
InterPro Alpha-catenin/vinculin-like_sf UniProtKB/TrEMBL
  Alpha_catenin UniProtKB/TrEMBL
  CTNNA2 UniProtKB/TrEMBL
  Vinculin/catenin UniProtKB/TrEMBL
  Vinculin_CS UniProtKB/TrEMBL
NCBI Gene Ctnna2 ENTREZGENE
PANTHER PTHR18914:SF23 UniProtKB/TrEMBL
Pfam Vinculin UniProtKB/TrEMBL
PRINTS ALPHACATENIN UniProtKB/TrEMBL
PROSITE VINCULIN_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF47220 UniProtKB/TrEMBL
UniProt A0A8C2VSP9_CHILA UniProtKB/TrEMBL
  A0A8C2VT03_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Ctnna2  catenin alpha 2    catenin (cadherin-associated protein), alpha 2  Symbol and/or name change 5135510 APPROVED