Bckdk (branched chain keto acid dehydrogenase kinase) - Rat Genome Database

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Gene: Bckdk (branched chain keto acid dehydrogenase kinase) Chinchilla lanigera
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Symbol: Bckdk
Name: branched chain keto acid dehydrogenase kinase
RGD ID: 8906806
Description: ENCODES a protein that exhibits [3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring)] kinase activity (ortholog); ATP binding (ortholog); protein kinase activity (ortholog); INVOLVED IN branched-chain amino acid catabolic process (ortholog); isoleucine catabolic process (ortholog); leucine catabolic process (ortholog); ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); epilepsy (ortholog); intellectual disability (ortholog); FOUND IN mitochondrial alpha-ketoglutarate dehydrogenase complex (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: 3-methyl-2-oxobutanoate dehydrogenase [lipoamide] kinase, mitochondrial; branched chain ketoacid dehydrogenase kinase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554937,940,315 - 7,946,317 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554937,940,358 - 7,946,317 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References


Genomics

Comparative Map Data
Bckdk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554937,940,315 - 7,946,317 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554937,940,358 - 7,946,317 (+)NCBIChiLan1.0ChiLan1.0
BCKDK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1631,106,107 - 31,112,791 (+)EnsemblGRCh38hg38GRCh38
GRCh381631,108,381 - 31,117,651 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371631,119,707 - 31,124,159 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361631,027,223 - 31,031,422 (+)NCBINCBI36hg18NCBI36
Build 341631,027,221 - 31,031,420NCBI
Celera1629,173,915 - 29,178,365 (-)NCBI
Cytogenetic Map16p11.2NCBI
HuRef1628,680,789 - 28,685,286 (+)NCBIHuRef
CHM1_11632,437,335 - 32,441,832 (+)NCBICHM1_1
Bckdk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,503,245 - 127,508,836 (+)NCBIGRCm39mm39
GRCm39 Ensembl7127,503,254 - 127,509,393 (+)Ensembl
GRCm387127,904,073 - 127,909,664 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7127,904,082 - 127,910,221 (+)EnsemblGRCm38mm10GRCm38
MGSCv377135,047,587 - 135,053,178 (+)NCBIGRCm37mm9NCBIm37
MGSCv367127,695,221 - 127,700,812 (+)NCBImm8
Celera7127,739,285 - 127,744,876 (+)NCBICelera
Cytogenetic Map7F3NCBI
Bckdk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21182,515,335 - 182,520,007 (+)NCBI
Rnor_6.0 Ensembl1199,351,628 - 199,356,881 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01199,351,628 - 199,356,299 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01206,374,221 - 206,378,892 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,189,665 - 187,194,336 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11187,340,263 - 187,344,799 (+)NCBI
Celera1180,166,156 - 180,170,827 (+)NCBICelera
Cytogenetic Map1q37NCBI
BCKDK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11631,476,917 - 31,481,193 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1631,476,917 - 31,483,639 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01623,856,349 - 23,860,586 (-)NCBIMhudiblu_PPA_v0panPan3
BCKDK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1617,128,615 - 17,132,925 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl617,128,824 - 17,133,585 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha618,703,976 - 18,708,295 (-)NCBI
ROS_Cfam_1.0617,259,506 - 17,263,825 (-)NCBI
UMICH_Zoey_3.1617,059,901 - 17,064,220 (-)NCBI
UNSW_CanFamBas_1.0616,978,760 - 16,983,079 (-)NCBI
UU_Cfam_GSD_1.0617,291,152 - 17,295,471 (-)NCBI
Bckdk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344125,369,683 - 125,373,950 (+)NCBI
SpeTri2.0NW_00493650113,467,603 - 13,471,810 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCKDK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl317,375,352 - 17,402,204 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1317,375,628 - 17,380,925 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2317,491,364 - 17,496,671 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BCKDK
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1527,794,963 - 27,799,239 (+)NCBI
ChlSab1.1 Ensembl527,795,083 - 27,799,410 (+)Ensembl
Bckdk
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478214,150,019 - 14,154,124 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000020445   ⟹   ENSCLAP00000020249
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554937,940,315 - 7,946,317 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000020446   ⟹   ENSCLAP00000020250
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554937,942,023 - 7,946,024 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000020447   ⟹   ENSCLAP00000020251
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554937,942,023 - 7,945,792 (+)Ensembl
RefSeq Acc Id: XM_005405298   ⟹   XP_005405355
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554937,940,358 - 7,946,317 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005405355 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005405355   ⟸   XM_005405298
- Sequence:
RefSeq Acc Id: ENSCLAP00000020249   ⟸   ENSCLAT00000020445
RefSeq Acc Id: ENSCLAP00000020250   ⟸   ENSCLAT00000020446
RefSeq Acc Id: ENSCLAP00000020251   ⟸   ENSCLAT00000020447


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013873 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000020249 ENTREZGENE
Ensembl Transcript ENSCLAT00000020445 ENTREZGENE
NCBI Gene Bckdk ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-30 Bckdk  branched chain keto acid dehydrogenase kinase    branched chain ketoacid dehydrogenase kinase  Symbol and/or name change 5135510 APPROVED