Ipo5 (importin 5) - Rat Genome Database

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Gene: Ipo5 (importin 5) Chinchilla lanigera
Analyze
Symbol: Ipo5
Name: importin 5
RGD ID: 8905163
Description: ENCODES a protein that exhibits nuclear import signal receptor activity (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); NLS-bearing protein import into nucleus (ortholog); positive regulation of protein import into nucleus (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Animal Disease Models (ortholog); holoprosencephaly 5 (ortholog); FOUND IN cytoplasm (ortholog); exocytic vesicle (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: importin-5; LOC102018355; uncharacterized LOC102018355
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540412,416,755 - 12,459,452 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540412,416,755 - 12,480,281 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Ipo5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540412,416,755 - 12,459,452 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540412,416,755 - 12,480,281 (-)NCBIChiLan1.0ChiLan1.0
IPO5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381397,953,675 - 98,024,296 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1397,953,658 - 98,024,296 (+)EnsemblGRCh38hg38GRCh38
GRCh371398,605,929 - 98,676,550 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361397,403,930 - 97,474,551 (+)NCBINCBI36hg18NCBI36
Celera1379,453,341 - 79,523,964 (+)NCBI
Cytogenetic Map13q32.2NCBI
HuRef1379,203,817 - 79,274,125 (+)NCBIHuRef
CHM1_11398,576,302 - 98,646,937 (+)NCBICHM1_1
T2T-CHM13v2.01397,160,508 - 97,231,138 (+)NCBI
Ipo5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914121,134,255 - 121,185,458 (+)NCBIGRCm39mm39
GRCm39 Ensembl14121,148,636 - 121,185,411 (+)Ensembl
GRCm3814120,896,840 - 120,948,046 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14120,911,224 - 120,947,999 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714121,310,416 - 121,347,268 (+)NCBIGRCm37mm9NCBIm37
MGSCv3614120,046,431 - 120,083,179 (+)NCBImm8
Celera14119,467,218 - 119,497,933 (+)NCBICelera
Cytogenetic Map14E4- E5NCBI
Ipo5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21597,990,755 - 98,041,074 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1598,005,299 - 98,041,126 (+)Ensembl
Rnor_6.015106,243,110 - 106,293,326 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15106,257,650 - 106,292,112 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015109,639,020 - 109,689,209 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415105,944,155 - 106,021,407 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115105,983,354 - 106,037,884 (+)NCBI
Celera1596,799,493 - 96,849,477 (+)NCBICelera
Cytogenetic Map15q24NCBI
IPO5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11398,295,472 - 98,336,707 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1398,294,766 - 98,336,700 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01379,115,320 - 79,185,598 (+)NCBIMhudiblu_PPA_v0panPan3
IPO5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12248,126,053 - 48,182,897 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2248,136,242 - 48,180,495 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2247,906,269 - 47,965,065 (+)NCBI
ROS_Cfam_1.02248,566,642 - 48,625,469 (+)NCBI
ROS_Cfam_1.0 Ensembl2248,566,671 - 48,625,439 (+)Ensembl
UMICH_Zoey_3.12248,215,943 - 48,274,722 (+)NCBI
UNSW_CanFamBas_1.02248,249,947 - 48,308,738 (+)NCBI
UU_Cfam_GSD_1.02248,285,886 - 48,344,697 (+)NCBI
Ipo5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945183,675,492 - 183,720,213 (+)NCBI
SpeTri2.0NW_00493647212,231,970 - 12,271,639 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IPO5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1167,004,109 - 67,060,551 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11167,019,299 - 67,059,375 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21174,138,179 - 74,173,295 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IPO5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1376,644,113 - 76,690,718 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl376,644,131 - 76,692,146 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604633,103,550 - 33,150,436 (+)NCBIVero_WHO_p1.0
Ipo5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479312,969,459 - 13,004,139 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462479312,971,397 - 13,004,126 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000003395   ⟹   ENSCLAP00000003328
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540412,416,755 - 12,458,617 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000003396   ⟹   ENSCLAP00000003329
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540412,418,064 - 12,459,452 (-)Ensembl
RefSeq Acc Id: XM_005374083   ⟹   XP_005374140
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540412,416,755 - 12,480,281 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516134   ⟹   XP_013371588
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540412,418,064 - 12,480,281 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374140 (Get FASTA)   NCBI Sequence Viewer  
  XP_013371588 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005374140   ⟸   XM_005374083
- Sequence:
RefSeq Acc Id: XP_013371588   ⟸   XM_013516134
- Sequence:
RefSeq Acc Id: ENSCLAP00000003328   ⟸   ENSCLAT00000003395
RefSeq Acc Id: ENSCLAP00000003329   ⟸   ENSCLAT00000003396
Protein Domains
Importin N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002384 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000003328 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAP00000003329 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003395 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAT00000003396 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  HEAT UniProtKB/TrEMBL
  Importin-beta_N UniProtKB/TrEMBL
  Importin_beta UniProtKB/TrEMBL
  Importin_rep_4 UniProtKB/TrEMBL
  Importin_rep_5 UniProtKB/TrEMBL
  Importin_rep_6 UniProtKB/TrEMBL
  TOG UniProtKB/TrEMBL
NCBI Gene Ipo5 ENTREZGENE
PANTHER PTHR10527 UniProtKB/TrEMBL
Pfam HEAT UniProtKB/TrEMBL
  Importin_rep_4 UniProtKB/TrEMBL
  Importin_rep_5 UniProtKB/TrEMBL
  Importin_rep_6 UniProtKB/TrEMBL
PROSITE IMPORTIN_B_NT UniProtKB/TrEMBL
SMART TOG UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C2UQQ9_CHILA UniProtKB/TrEMBL
  A0A8C2UU32_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-21 Ipo5  importin 5  LOC102018355  uncharacterized LOC102018355  Data Merged 737654 PROVISIONAL