Stim1 (stromal interaction molecule 1) - Rat Genome Database

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Gene: Stim1 (stromal interaction molecule 1) Chinchilla lanigera
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Symbol: Stim1
Name: stromal interaction molecule 1
RGD ID: 8904614
Description: ENCODES a protein that exhibits calcium channel regulator activity (ortholog); calcium ion binding (ortholog); identical protein binding (ortholog); INVOLVED IN activation of store-operated calcium channel activity (ortholog); cation transport (ortholog); detection of calcium ion (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH congenital structural myopathy (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN cortical endoplasmic reticulum (ortholog); endoplasmic reticulum (ortholog); growth cone (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541419,652,990 - 19,847,964 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541419,652,990 - 19,849,353 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Stim1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541419,652,990 - 19,847,964 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541419,652,990 - 19,849,353 (+)NCBIChiLan1.0ChiLan1.0
STIM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl113,854,527 - 4,093,210 (+)EnsemblGRCh38hg38GRCh38
GRCh38113,854,604 - 4,093,210 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37113,875,834 - 4,114,440 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36113,833,509 - 4,071,015 (+)NCBINCBI36hg18NCBI36
Build 34113,833,508 - 4,071,015NCBI
Celera113,882,103 - 4,119,396 (+)NCBI
Cytogenetic Map11p15.4NCBI
HuRef113,610,828 - 3,847,861 (+)NCBIHuRef
CHM1_1113,876,404 - 4,113,905 (+)NCBICHM1_1
Stim1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397101,909,279 - 102,086,525 (+)NCBIGRCm39mm39
GRCm39 Ensembl7101,917,013 - 102,086,526 (+)Ensembl
GRCm387102,261,514 - 102,437,319 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7102,267,806 - 102,437,319 (+)EnsemblGRCm38mm10GRCm38
MGSCv377109,416,338 - 109,585,374 (+)NCBIGRCm37mm9NCBIm37
MGSCv367102,141,645 - 102,310,681 (+)NCBImm8
Celera7102,604,834 - 102,804,802 (+)NCBICelera
Cytogenetic Map7E2- E3NCBI
cM Map754.71NCBI
Stim1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21156,656,246 - 156,818,777 (+)NCBI
Rnor_6.0 Ensembl1167,373,678 - 167,533,420 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01167,373,894 - 167,533,412 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01173,562,261 - 173,722,026 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41159,761,567 - 159,925,836 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11159,840,391 - 160,004,859 (+)NCBI
Celera1154,724,106 - 154,885,972 (+)NCBICelera
Cytogenetic Map1q32NCBI
STIM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1113,839,958 - 4,066,644 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl113,840,513 - 4,065,224 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0113,726,501 - 3,954,951 (+)NCBIMhudiblu_PPA_v0panPan3
STIM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12126,394,592 - 26,594,764 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2126,394,811 - 26,593,375 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2126,165,634 - 26,364,115 (+)NCBI
ROS_Cfam_1.02126,605,233 - 26,804,185 (+)NCBI
UMICH_Zoey_3.12126,396,567 - 26,594,567 (+)NCBI
UNSW_CanFamBas_1.02126,612,342 - 26,810,837 (+)NCBI
UU_Cfam_GSD_1.02126,514,667 - 26,713,342 (+)NCBI
Stim1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494759,250,243 - 59,464,016 (-)NCBI
SpeTri2.0NW_004936498849,775 - 1,063,552 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STIM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl96,066,617 - 6,270,575 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.196,066,612 - 6,270,090 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.296,848,913 - 7,055,195 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STIM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1162,651,472 - 62,865,992 (-)NCBI
ChlSab1.1 Ensembl162,651,290 - 62,865,986 (-)Ensembl
Vero_WHO_p1.0NW_02366604363,036,418 - 63,251,216 (+)NCBI
Stim1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248175,291,111 - 5,522,732 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005380038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005380039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013511939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013511940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01015328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01015329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01015330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01015331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01015332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01015333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01015334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01015335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01015336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01015337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01015338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01015339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBCE01153202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000023678   ⟹   ENSCLAP00000023457
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541419,652,990 - 19,847,964 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000023679   ⟹   ENSCLAP00000023458
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541419,653,222 - 19,847,501 (+)Ensembl
RefSeq Acc Id: XM_005380038   ⟹   XP_005380095
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541419,652,990 - 19,849,353 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005380039   ⟹   XP_005380096
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541419,652,990 - 19,849,353 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511939   ⟹   XP_013367393
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541419,652,990 - 19,849,353 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511940   ⟹   XP_013367394
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541419,652,990 - 19,845,563 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005380095 (Get FASTA)   NCBI Sequence Viewer  
  XP_005380096 (Get FASTA)   NCBI Sequence Viewer  
  XP_013367393 (Get FASTA)   NCBI Sequence Viewer  
  XP_013367394 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005380095   ⟸   XM_005380038
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005380096   ⟸   XM_005380039
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013367393   ⟸   XM_013511939
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013367394   ⟸   XM_013511940
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSCLAP00000023457   ⟸   ENSCLAT00000023678
RefSeq Acc Id: ENSCLAP00000023458   ⟸   ENSCLAT00000023679


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016086 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000023457 ENTREZGENE
  ENSCLAP00000023458 ENTREZGENE
Ensembl Transcript ENSCLAT00000023678 ENTREZGENE
  ENSCLAT00000023679 ENTREZGENE
NCBI Gene Stim1 ENTREZGENE