Racgap1 (Rac GTPase activating protein 1) - Rat Genome Database

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Gene: Racgap1 (Rac GTPase activating protein 1) Chinchilla lanigera
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Symbol: Racgap1
Name: Rac GTPase activating protein 1
RGD ID: 8903964
Description: ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); gamma-tubulin binding (ortholog); INVOLVED IN actomyosin contractile ring assembly (ortholog); mitotic cytokinesis (ortholog); mitotic spindle midzone assembly (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); polycystic ovary syndrome (ortholog); FOUND IN centralspindlin complex (ortholog); cleavage furrow (ortholog); extrinsic component of cytoplasmic side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: rac GTPase-activating protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955547581,134 - 616,087 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955547584,885 - 615,883 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References


Genomics

Comparative Map Data
Racgap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955547581,134 - 616,087 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955547584,885 - 615,883 (-)NCBIChiLan1.0ChiLan1.0
RACGAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1249,976,923 - 50,033,136 (-)EnsemblGRCh38hg38GRCh38
GRCh381249,989,162 - 50,033,206 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371250,382,945 - 50,419,277 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361248,669,212 - 48,705,488 (-)NCBINCBI36hg18NCBI36
Build 341248,669,211 - 48,705,488NCBI
Celera1249,179,065 - 49,215,304 (-)NCBI
Cytogenetic Map12q13.12NCBI
HuRef1247,414,446 - 47,451,548 (-)NCBIHuRef
CHM1_11250,349,102 - 50,385,463 (-)NCBICHM1_1
Racgap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391599,518,377 - 99,549,537 (-)NCBIGRCm39mm39
GRCm39 Ensembl1599,518,377 - 99,549,537 (-)Ensembl
GRCm381599,620,496 - 99,651,656 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1599,620,496 - 99,651,656 (-)EnsemblGRCm38mm10GRCm38
MGSCv371599,450,927 - 99,482,052 (-)NCBIGRCm37mm9NCBIm37
MGSCv361599,448,530 - 99,479,655 (-)NCBImm8
Celera15101,775,878 - 101,807,252 (-)NCBICelera
Cytogenetic Map15F1NCBI
Racgap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27130,750,936 - 130,780,891 (-)NCBI
Rnor_6.0 Ensembl7141,277,312 - 141,307,233 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.07141,277,303 - 141,308,849 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07138,713,215 - 138,728,271 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47138,366,356 - 138,395,716 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17138,443,204 - 138,463,026 (-)NCBI
Celera7127,232,693 - 127,262,334 (-)NCBICelera
Cytogenetic Map7q36NCBI
RACGAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11239,625,763 - 39,660,040 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1239,625,796 - 39,672,256 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01238,729,885 - 38,766,063 (+)NCBIMhudiblu_PPA_v0panPan3
RACGAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1274,689,914 - 4,718,181 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl274,689,483 - 4,727,933 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2741,541,242 - 41,569,279 (-)NCBI
ROS_Cfam_1.0274,737,980 - 4,766,051 (+)NCBI
UMICH_Zoey_3.1274,702,991 - 4,731,034 (+)NCBI
UNSW_CanFamBas_1.0274,692,808 - 4,720,859 (+)NCBI
UU_Cfam_GSD_1.02741,935,897 - 41,964,171 (-)NCBI
Racgap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494565,468,262 - 65,499,692 (+)NCBI
SpeTri2.0NW_0049365127,665,144 - 7,696,615 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RACGAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl515,904,707 - 15,943,614 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1515,894,314 - 15,943,619 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2516,400,485 - 16,403,961 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RACGAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11146,218,987 - 46,260,477 (-)NCBI
ChlSab1.1 Ensembl1146,220,090 - 46,254,602 (-)Ensembl
Vero_WHO_p1.0NW_023666037199,866,951 - 199,902,603 (+)NCBI
Racgap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248162,268,879 - 2,303,305 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000001474   ⟹   ENSCLAP00000001431
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955547581,134 - 616,087 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000001475   ⟹   ENSCLAP00000001432
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955547581,134 - 616,087 (-)Ensembl
RefSeq Acc Id: XM_005411860   ⟹   XP_005411917
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955547584,885 - 615,883 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005411861   ⟹   XP_005411918
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955547584,885 - 615,883 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005411862   ⟹   XP_005411919
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955547584,885 - 615,883 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005411863   ⟹   XP_005411920
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955547584,885 - 615,883 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005411917 (Get FASTA)   NCBI Sequence Viewer  
  XP_005411918 (Get FASTA)   NCBI Sequence Viewer  
  XP_005411919 (Get FASTA)   NCBI Sequence Viewer  
  XP_005411920 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005411920   ⟸   XM_005411863
- Sequence:
RefSeq Acc Id: XP_005411919   ⟸   XM_005411862
- Sequence:
RefSeq Acc Id: XP_005411917   ⟸   XM_005411860
- Sequence:
RefSeq Acc Id: XP_005411918   ⟸   XM_005411861
- Sequence:
RefSeq Acc Id: ENSCLAP00000001432   ⟸   ENSCLAT00000001475
RefSeq Acc Id: ENSCLAP00000001431   ⟸   ENSCLAT00000001474


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001084 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000001431 ENTREZGENE
Ensembl Transcript ENSCLAT00000001474 ENTREZGENE
NCBI Gene Racgap1 ENTREZGENE