Ttc23l (tetratricopeptide repeat domain 23 like) - Rat Genome Database

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Gene: Ttc23l (tetratricopeptide repeat domain 23 like) Chinchilla lanigera
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Symbol: Ttc23l
Name: tetratricopeptide repeat domain 23 like
RGD ID: 8903774
Description: ASSOCIATED WITH alpha-methylacyl-CoA racemase deficiency (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tetratricopeptide repeat domain 23-like; tetratricopeptide repeat protein 23-like
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542619,987,093 - 20,020,364 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542619,985,179 - 20,029,902 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ttc23l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542619,987,093 - 20,020,364 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542619,985,179 - 20,029,902 (+)NCBIChiLan1.0ChiLan1.0
TTC23L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38534,839,164 - 34,925,682 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl534,838,833 - 34,900,511 (+)EnsemblGRCh38hg38GRCh38
GRCh37534,839,269 - 34,925,787 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36534,875,026 - 34,935,324 (+)NCBINCBI36Build 36hg18NCBI36
Celera534,721,072 - 34,781,799 (+)NCBICelera
Cytogenetic Map5p13.2NCBI
HuRef534,787,782 - 34,847,729 (+)NCBIHuRef
CHM1_1534,841,468 - 34,901,927 (+)NCBICHM1_1
T2T-CHM13v2.0535,086,287 - 35,172,714 (+)NCBIT2T-CHM13v2.0
Ttc23l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391510,497,309 - 10,559,006 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1510,500,188 - 10,558,754 (-)EnsemblGRCm39 Ensembl
GRCm381510,497,223 - 10,558,775 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1510,500,102 - 10,558,668 (-)EnsemblGRCm38mm10GRCm38
MGSCv371510,433,702 - 10,488,423 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361510,444,827 - 10,504,789 (-)NCBIMGSCv36mm8
Celera1510,305,843 - 10,360,380 (-)NCBICelera
Cytogenetic Map15A1NCBI
cM Map155.35NCBI
Ttc23l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8261,203,825 - 61,265,453 (-)NCBIGRCr8
mRatBN7.2259,476,666 - 59,538,313 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl259,476,669 - 59,538,282 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0260,492,314 - 60,538,551 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl260,492,256 - 60,538,088 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0284,136,482 - 84,197,625 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4259,857,877 - 59,916,848 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera259,134,717 - 59,197,145 (+)NCBICelera
Cytogenetic Map2q16NCBI
TTC23L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2475,436,262 - 75,499,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1573,584,931 - 73,653,250 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0575,470,535 - 75,532,771 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1580,750,710 - 80,810,923 (-)NCBIpanpan1.1PanPan1.1panPan2
TTC23L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1473,395,974 - 73,455,567 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl473,400,166 - 73,453,498 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha473,012,406 - 73,071,821 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0473,901,731 - 73,961,222 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl473,904,118 - 73,959,170 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1473,649,284 - 73,708,403 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0473,772,742 - 73,831,929 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0474,305,963 - 74,365,826 (-)NCBIUU_Cfam_GSD_1.0
Ttc23l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213224,663,609 - 224,721,156 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365186,641,805 - 6,706,937 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC23L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1620,443,661 - 20,478,632 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11620,441,253 - 20,491,569 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21621,343,863 - 21,402,683 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TTC23L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1433,732,841 - 33,793,975 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl433,739,203 - 33,783,489 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607124,031,988 - 24,085,744 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc23l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475920,022,653 - 20,052,817 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000009981   ⟹   ENSCLAP00000009852
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542619,987,093 - 20,020,364 (+)Ensembl
RefSeq Acc Id: XM_005386177   ⟹   XP_005386234
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542619,985,183 - 20,026,928 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005386178   ⟹   XP_005386235
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542619,985,203 - 20,029,649 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005386181   ⟹   XP_005386238
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542619,985,179 - 20,022,394 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013514964   ⟹   XP_013370418
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542619,985,182 - 20,022,393 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013514965   ⟹   XP_013370419
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542619,986,380 - 20,020,364 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013514966   ⟹   XP_013370420
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542619,985,192 - 20,020,364 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013514967   ⟹   XP_013370421
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542619,986,030 - 20,020,364 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013514968   ⟹   XP_013370422
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542619,986,327 - 20,020,364 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001234319
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542619,985,199 - 20,029,902 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005386238   ⟸   XM_005386181
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_005386234   ⟸   XM_005386177
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005386235   ⟸   XM_005386178
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013370418   ⟸   XM_013514964
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013370420   ⟸   XM_013514966
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013370421   ⟸   XM_013514967
- Peptide Label: isoform X7
- UniProtKB: A0A8C2YMN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370422   ⟸   XM_013514968
- Peptide Label: isoform X7
- UniProtKB: A0A8C2YMN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370419   ⟸   XM_013514965
- Peptide Label: isoform X4
- UniProtKB: A0A8C2YMN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000009852   ⟸   ENSCLAT00000009981


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006825 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000009981 ENTREZGENE
  ENSCLAT00000009981.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TTC23/TTC23L UniProtKB/TrEMBL
NCBI Gene Ttc23l ENTREZGENE
PANTHER PTHR14485 UniProtKB/TrEMBL
  TETRATRICOPEPTIDE REPEAT PROTEIN 23-LIKE UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A8C2YMN1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Ttc23l  tetratricopeptide repeat domain 23 like    tetratricopeptide repeat domain 23-like  Symbol and/or name change 5135510 APPROVED