Nkain4 (sodium/potassium transporting ATPase interacting 4) - Rat Genome Database

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Gene: Nkain4 (sodium/potassium transporting ATPase interacting 4) Chinchilla lanigera
Analyze
Symbol: Nkain4
Name: sodium/potassium transporting ATPase interacting 4
RGD ID: 8903544
Description: ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Na+/K+ transporting ATPase interacting 4; sodium/potassium-transporting ATPase subunit beta-1-interacting protein 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528903,176 - 918,903 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955528903,195 - 917,522 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Nkain4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528903,176 - 918,903 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955528903,195 - 917,522 (+)NCBIChiLan1.0ChiLan1.0
NKAIN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382063,240,784 - 63,254,921 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2063,240,784 - 63,272,694 (-)EnsemblGRCh38hg38GRCh38
GRCh372061,872,136 - 61,885,815 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362061,342,584 - 61,356,335 (-)NCBINCBI36Build 36hg18NCBI36
Build 342061,342,583 - 61,356,335NCBI
Celera2058,549,620 - 58,563,376 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2058,597,674 - 58,611,430 (-)NCBIHuRef
CHM1_12061,773,193 - 61,786,951 (-)NCBICHM1_1
T2T-CHM13v2.02065,046,799 - 65,060,428 (-)NCBIT2T-CHM13v2.0
Nkain4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392180,576,559 - 180,596,730 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2180,576,565 - 180,596,492 (-)EnsemblGRCm39 Ensembl
GRCm382180,934,766 - 180,954,937 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,934,772 - 180,954,699 (-)EnsemblGRCm38mm10GRCm38
MGSCv372180,669,477 - 180,689,404 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362180,864,180 - 180,884,102 (-)NCBIMGSCv36mm8
Celera2185,020,988 - 185,041,181 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.53NCBI
Nkain4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,430,862 - 188,451,561 (-)NCBIGRCr8
mRatBN7.23168,053,294 - 168,073,944 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3168,053,066 - 168,073,925 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3172,433,469 - 172,454,216 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03181,392,560 - 181,413,307 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03178,054,255 - 178,074,862 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03176,444,545 - 176,465,197 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3176,444,544 - 176,465,162 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03180,154,359 - 180,175,077 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,043,967 - 170,064,582 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13169,950,006 - 169,970,618 (-)NCBI
Celera3164,511,052 - 164,531,670 (+)NCBICelera
Cytogenetic Map3q43NCBI
NKAIN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22169,027,465 - 69,041,490 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12069,019,471 - 69,033,500 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02059,623,891 - 59,637,916 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12061,163,951 - 61,175,313 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2061,162,915 - 61,171,567 (-)Ensemblpanpan1.1panPan2
NKAIN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,956,461 - 46,966,271 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2446,955,995 - 46,971,076 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2446,140,365 - 46,155,094 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,910,173 - 47,924,906 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,909,932 - 47,924,962 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,925,564 - 46,940,338 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02447,049,578 - 47,064,356 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,805,924 - 47,820,671 (-)NCBIUU_Cfam_GSD_1.0
NKAIN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,356,422 - 62,380,859 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,356,862 - 62,369,461 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NKAIN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12945,904 - 965,530 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2945,994 - 964,800 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605048,589,778 - 48,703,223 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nkain4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474128,945,367 - 28,965,672 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000005065   ⟹   ENSCLAP00000004973
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955528903,176 - 918,903 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000005066   ⟹   ENSCLAP00000004974
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955528903,195 - 917,516 (+)Ensembl
RefSeq Acc Id: XM_005409990   ⟹   XP_005410047
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955528903,195 - 917,522 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005409991   ⟹   XP_005410048
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955528903,195 - 917,522 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005409992   ⟹   XP_005410049
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955528903,195 - 914,146 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005409993   ⟹   XP_005410050
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955528903,195 - 917,522 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005410047   ⟸   XM_005409990
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005410048   ⟸   XM_005409991
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UUJ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005410050   ⟸   XM_005409993
- Peptide Label: isoform X4
- UniProtKB: A0A8C2UX77 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005410049   ⟸   XM_005409992
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000004974   ⟸   ENSCLAT00000005066
RefSeq Acc Id: ENSCLAP00000004973   ⟸   ENSCLAT00000005065


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003530 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000005065 ENTREZGENE
  ENSCLAT00000005065.1 UniProtKB/TrEMBL
  ENSCLAT00000005066 ENTREZGENE
  ENSCLAT00000005066.1 UniProtKB/TrEMBL
InterPro Na/K-Atpase_Interacting UniProtKB/TrEMBL
NCBI Gene Nkain4 ENTREZGENE
PANTHER PTHR13084 UniProtKB/TrEMBL
  SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA-1-INTERACTING PROTEIN 4 UniProtKB/TrEMBL
Pfam NKAIN UniProtKB/TrEMBL
UniProt A0A8C2UUJ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UX77 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-28 Nkain4  sodium/potassium transporting ATPase interacting 4    Sodium/potassium transporting ATPase interacting 4  Symbol and/or name change 5135510 APPROVED
2016-12-13 Nkain4  Sodium/potassium transporting ATPase interacting 4    Na+/K+ transporting ATPase interacting 4  Symbol and/or name change 5135510 APPROVED