Ophn1 (oligophrenin 1) - Rat Genome Database

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Gene: Ophn1 (oligophrenin 1) Chinchilla lanigera
Analyze
Symbol: Ophn1
Name: oligophrenin 1
RGD ID: 8903473
Description: ENCODES a protein that exhibits actin binding (ortholog); GTPase activator activity (ortholog); ionotropic glutamate receptor binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cell junction assembly (ortholog); cell morphogenesis involved in neuron differentiation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); cerebellar hypoplasia (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: oligophrenin-1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554757,581,675 - 8,018,139 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554757,576,629 - 8,019,132 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ophn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554757,581,675 - 8,018,139 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554757,576,629 - 8,019,132 (-)NCBIChiLan1.0ChiLan1.0
OPHN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X68,042,344 - 68,433,841 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX67,949,349 - 68,433,913 (-)EnsemblGRCh38hg38GRCh38
GRCh37X67,262,186 - 67,653,337 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X67,179,440 - 67,570,372 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X67,045,735 - 67,436,668NCBI
CeleraX67,613,664 - 68,004,666 (-)NCBICelera
Cytogenetic MapXq12NCBI
HuRefX61,092,466 - 61,481,527 (-)NCBIHuRef
CHM1_1X67,154,622 - 67,546,029 (-)NCBICHM1_1
T2T-CHM13v2.0X66,475,136 - 66,867,394 (-)NCBIT2T-CHM13v2.0
Ophn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X97,597,886 - 97,934,691 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX97,597,883 - 97,934,631 (-)EnsemblGRCm39 Ensembl
GRCm38X98,554,280 - 98,891,082 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX98,554,277 - 98,891,025 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X95,752,854 - 96,086,324 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X94,760,234 - 95,093,704 (-)NCBIMGSCv36mm8
CeleraX85,501,536 - 85,832,824 (-)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX42.94NCBI
Ophn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X67,639,956 - 68,018,217 (-)NCBIGRCr8
mRatBN7.2X63,599,746 - 63,976,678 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX63,603,042 - 63,976,633 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX65,088,787 - 65,460,138 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X68,589,342 - 68,960,693 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X66,150,102 - 66,521,448 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X68,185,865 - 68,579,518 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX68,189,161 - 68,563,137 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X69,060,378 - 69,453,851 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X86,519,900 - 86,801,421 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX64,002,740 - 64,359,348 (-)NCBICelera
Cytogenetic MapXq22NCBI
OPHN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X67,696,897 - 68,083,351 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X67,701,635 - 68,086,921 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X57,288,297 - 57,674,685 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X67,354,364 - 67,740,003 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX67,359,364 - 67,739,114 (-)Ensemblpanpan1.1panPan2
OPHN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X52,418,390 - 52,983,155 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX52,455,373 - 52,982,244 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX43,271,709 - 43,797,820 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X53,420,053 - 53,943,003 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX53,423,094 - 53,942,104 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X51,391,501 - 51,917,738 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X52,722,901 - 53,243,080 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X52,643,831 - 53,170,125 (-)NCBIUU_Cfam_GSD_1.0
Ophn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X49,111,728 - 49,477,619 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366356,923 - 244,408 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366356,966 - 243,209 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OPHN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX54,055,092 - 54,616,959 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X54,056,504 - 54,617,045 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X60,818,920 - 61,106,085 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OPHN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X57,906,868 - 58,291,358 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX57,911,555 - 58,290,900 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660835,360,305 - 5,607,870 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ophn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248911,908,044 - 2,425,144 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248911,907,233 - 2,429,714 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005401584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005401585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01055012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01055025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBBH01127057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCLAT00000010820   ⟹   ENSCLAP00000010688
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554757,581,675 - 8,018,139 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000010821   ⟹   ENSCLAP00000010689
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554757,786,394 - 8,018,135 (-)Ensembl
RefSeq Acc Id: XM_005401584   ⟹   XP_005401641
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554757,576,629 - 8,018,753 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005401585   ⟹   XP_005401642
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554757,576,629 - 8,019,132 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005401641 (Get FASTA)   NCBI Sequence Viewer  
  XP_005401642 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010688
  ENSCLAP00000010688.1
  ENSCLAP00000010689.1
RefSeq Acc Id: XP_005401642   ⟸   XM_005401585
- UniProtKB: A0A8C2VAU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005401641   ⟸   XM_005401584
- UniProtKB: A0A8C2VAU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000010689   ⟸   ENSCLAT00000010821
RefSeq Acc Id: ENSCLAP00000010688   ⟸   ENSCLAT00000010820
Protein Domains
BAR   PH   Rho-GAP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007376 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010820 ENTREZGENE
  ENSCLAT00000010820.1 UniProtKB/TrEMBL
  ENSCLAT00000010821.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.555.10 UniProtKB/TrEMBL
  1.20.1270.60 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/TrEMBL
  BAR_dom UniProtKB/TrEMBL
  GRAF_fam UniProtKB/TrEMBL
  OPHN1_BAR UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  PH_GRAF UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  RhoGAP_dom UniProtKB/TrEMBL
NCBI Gene Ophn1 ENTREZGENE
PANTHER OLIGOPHRENIN 1 UniProtKB/TrEMBL
  OLIGOPHRENIN-1 UniProtKB/TrEMBL
Pfam BAR_3 UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
  RhoGAP UniProtKB/TrEMBL
PROSITE PH_DOMAIN UniProtKB/TrEMBL
  RHOGAP UniProtKB/TrEMBL
SMART RhoGAP UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF103657 UniProtKB/TrEMBL
  SSF48350 UniProtKB/TrEMBL
UniProt A0A8C2V5S5_CHILA UniProtKB/TrEMBL
  A0A8C2VAU4 ENTREZGENE, UniProtKB/TrEMBL