Jph2 (junctophilin 2) - Rat Genome Database

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Gene: Jph2 (junctophilin 2) Chinchilla lanigera
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Symbol: Jph2
Name: junctophilin 2
RGD ID: 8901744
Description: ENCODES a protein that exhibits core promoter sequence-specific DNA binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); phosphatidic acid binding (ortholog); INVOLVED IN calcium ion homeostasis (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); negative regulation of transcription, DNA-templated (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); dilated cardiomyopathy (ortholog); Dilated Cardiomyopathy with Left Ventricular Noncompaction (ortholog); FOUND IN junctional membrane complex (ortholog); membrane (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: junctophilin-2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544513,118,717 - 13,187,235 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544513,117,312 - 13,190,061 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Jph2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544513,118,717 - 13,187,235 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544513,117,312 - 13,190,061 (+)NCBIChiLan1.0ChiLan1.0
JPH2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2044,106,590 - 44,187,188 (-)EnsemblGRCh38hg38GRCh38
GRCh382044,106,590 - 44,187,946 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372042,735,230 - 42,815,828 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362042,173,751 - 42,249,632 (-)NCBINCBI36hg18NCBI36
Build 342042,238,870 - 42,249,632NCBI
Celera2039,448,942 - 39,524,817 (-)NCBI
Cytogenetic Map20q13.12NCBI
HuRef2039,477,014 - 39,552,742 (-)NCBIHuRef
CHM1_12042,643,539 - 42,718,371 (-)NCBICHM1_1
Jph2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392163,178,162 - 163,239,969 (-)NCBIGRCm39mm39
GRCm39 Ensembl2163,178,162 - 163,239,913 (-)Ensembl
GRCm382163,336,242 - 163,398,049 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2163,336,242 - 163,397,993 (-)EnsemblGRCm38mm10GRCm38
MGSCv372163,163,509 - 163,223,686 (-)NCBIGRCm37mm9NCBIm37
MGSCv362163,029,214 - 163,089,391 (-)NCBImm8
Celera2169,287,502 - 169,347,663 (-)NCBICelera
Cytogenetic Map2H3NCBI
Jph2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23151,994,768 - 152,058,941 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl3159,712,325 - 159,775,643 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03159,709,998 - 159,776,536 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03165,905,606 - 165,968,938 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43154,223,264 - 154,289,256 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13154,129,305 - 154,195,865 (-)NCBI
Celera3150,654,009 - 150,714,685 (-)NCBICelera
Cytogenetic Map3q42NCBI
JPH2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12041,535,153 - 41,610,760 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v02040,439,975 - 40,517,438 (-)NCBIMhudiblu_PPA_v0panPan3
JPH2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12431,664,106 - 31,674,487 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2431,665,771 - 31,687,228 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2431,306,256 - 31,370,751 (-)NCBI
ROS_Cfam_1.02432,371,015 - 32,435,719 (-)NCBI
UMICH_Zoey_3.12431,634,424 - 31,698,906 (-)NCBI
UNSW_CanFamBas_1.02431,746,535 - 31,811,045 (-)NCBI
UU_Cfam_GSD_1.02432,288,966 - 32,353,673 (-)NCBI
Jph2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640180,699,478 - 180,735,450 (-)NCBI
SpeTri2.0NW_0049365302,570,365 - 2,606,743 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JPH2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11746,590,302 - 46,665,326 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21751,928,578 - 51,971,531 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JPH2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1219,626,035 - 19,703,589 (+)NCBI
ChlSab1.1 Ensembl219,626,832 - 19,703,765 (+)Ensembl
Vero_WHO_p1.0NW_02366605068,298,785 - 68,379,794 (+)NCBI
Jph2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479010,250,403 - 10,320,279 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011340   ⟹   ENSCLAP00000011204
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544513,118,717 - 13,187,235 (+)Ensembl
RefSeq Acc Id: XM_013518286   ⟹   XP_013373740
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544513,117,312 - 13,190,061 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013373740 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013373740   ⟸   XM_013518286
- Sequence:
RefSeq Acc Id: ENSCLAP00000011204   ⟸   ENSCLAT00000011340


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007741 Ensembl
NCBI Gene Jph2 ENTREZGENE