Tac3 (tachykinin precursor 3) - Rat Genome Database

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Gene: Tac3 (tachykinin precursor 3) Chinchilla lanigera
Analyze
Symbol: Tac3
Name: tachykinin precursor 3
RGD ID: 8900963
Description: ENCODES a protein that exhibits neuromedin K receptor binding (ortholog); substance K receptor binding (ortholog); INVOLVED IN positive regulation of blood pressure (ortholog); positive regulation of flagellated sperm motility (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Delayed Puberty (ortholog); genetic disease (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tachykinin 3; tachykinin-3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554584,765,089 - 4,771,316 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554584,765,153 - 4,771,122 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tac3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554584,765,089 - 4,771,316 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554584,765,153 - 4,771,122 (-)NCBIChiLan1.0ChiLan1.0
TAC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381257,010,000 - 57,016,529 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1257,010,000 - 57,028,883 (-)EnsemblGRCh38hg38GRCh38
GRCh371257,403,784 - 57,410,313 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361255,690,051 - 55,696,592 (-)NCBINCBI36Build 36hg18NCBI36
Build 341255,690,052 - 55,696,592NCBI
Celera1257,057,711 - 57,064,274 (-)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1254,442,327 - 54,448,890 (-)NCBIHuRef
CHM1_11257,371,502 - 57,378,066 (-)NCBICHM1_1
T2T-CHM13v2.01256,977,869 - 56,984,399 (-)NCBIT2T-CHM13v2.0
Tac2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,560,347 - 127,567,637 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10127,560,347 - 127,567,637 (+)EnsemblGRCm39 Ensembl
GRCm3810127,724,478 - 127,731,768 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10127,724,478 - 127,731,768 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710127,162,448 - 127,168,824 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610127,127,427 - 127,134,716 (+)NCBIMGSCv36mm8
Celera10130,119,973 - 130,126,335 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1074.81NCBI
Tac3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8765,447,817 - 65,454,427 (+)NCBIGRCr8
mRatBN7.2763,562,552 - 63,569,170 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl763,562,552 - 63,569,170 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx765,451,790 - 65,458,396 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0767,654,078 - 67,660,686 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0767,455,380 - 67,461,959 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0771,023,976 - 71,030,582 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl771,023,976 - 71,030,582 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0771,196,136 - 71,203,264 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4767,717,068 - 67,723,674 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1767,737,797 - 67,744,404 (+)NCBI
Celera760,701,661 - 60,708,225 (+)NCBICelera
Cytogenetic Map7q22NCBI
TAC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21037,323,006 - 37,331,817 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11237,319,769 - 37,328,587 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01231,911,231 - 31,917,786 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11232,164,278 - 32,170,834 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1232,164,278 - 32,170,834 (+)Ensemblpanpan1.1panPan2
TAC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha101,223,725 - 1,230,508 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0101,170,284 - 1,178,714 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1101,147,077 - 1,153,850 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0101,389,009 - 1,395,794 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0101,513,748 - 1,520,530 (-)NCBIUU_Cfam_GSD_1.0
Tac3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,631,946 - 57,643,447 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366461,226,774 - 1,233,581 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366461,226,797 - 1,233,513 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl522,324,932 - 22,332,916 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1522,324,927 - 22,336,464 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2524,043,154 - 24,056,419 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap5p12-p11NCBI
TAC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,920,381 - 52,927,494 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037193,046,151 - 193,053,307 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tac3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480210,918,489 - 10,924,616 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480210,918,968 - 10,924,512 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000020845   ⟹   ENSCLAP00000020647
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554584,765,089 - 4,771,316 (-)Ensembl
RefSeq Acc Id: XM_005397338   ⟹   XP_005397395
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554584,765,153 - 4,771,122 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013520998   ⟹   XP_013376452
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554584,765,153 - 4,771,122 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005397395 (Get FASTA)   NCBI Sequence Viewer  
  XP_013376452 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000020647
  ENSCLAP00000020647.1
Reference Protein Sequences
RefSeq Acc Id: XP_005397395   ⟸   XM_005397338
- UniProtKB: A0A8C2VUA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013376452   ⟸   XM_013520998
- UniProtKB: A0A8C2VUA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000020647   ⟸   ENSCLAT00000020845


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000014146 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020845 ENTREZGENE
  ENSCLAT00000020845.1 UniProtKB/TrEMBL
InterPro Neurokinin-B/TAC3 UniProtKB/TrEMBL
  Tachy_Neuro_lke_CS UniProtKB/TrEMBL
NCBI Gene Tac3 ENTREZGENE
PANTHER PTHR15536 UniProtKB/TrEMBL
  TACHYKININ-3 UniProtKB/TrEMBL
Pfam Neurokinin_B UniProtKB/TrEMBL
PIRSF Neurokinin UniProtKB/TrEMBL
PRINTS NEUROKININB UniProtKB/TrEMBL
PROSITE TACHYKININ UniProtKB/TrEMBL
UniProt A0A8C2VUA7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-16 Tac3  tachykinin precursor 3  Tac3  tachykinin 3  Symbol and/or name change 5135510 APPROVED