Pebp1 (phosphatidylethanolamine binding protein 1) - Rat Genome Database

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Gene: Pebp1 (phosphatidylethanolamine binding protein 1) Chinchilla lanigera
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Symbol: Pebp1
Name: phosphatidylethanolamine binding protein 1
RGD ID: 8900294
Description: ENCODES a protein that exhibits ATP binding (ortholog); enzyme binding (ortholog); kinase binding (ortholog); INVOLVED IN aging (ortholog); eating behavior (ortholog); hippocampus development (ortholog); PARTICIPATES IN the extracellular signal-regulated Raf/Mek/Erk signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); FOUND IN apical part of cell (ortholog); axon terminus (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: phosphatidylethanolamine-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545513,217,012 - 13,222,370 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Pebp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545513,217,012 - 13,222,370 (-)NCBIChiLan1.0ChiLan1.0
PEBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812118,136,124 - 118,145,584 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl12118,136,124 - 118,145,584 (+)EnsemblGRCh38hg38GRCh38
GRCh3712118,573,929 - 118,583,389 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612117,058,253 - 117,067,773 (+)NCBINCBI36hg18NCBI36
Build 3412117,036,589 - 117,046,110NCBI
Celera12118,204,960 - 118,214,471 (+)NCBI
Cytogenetic Map12q24.23NCBI
HuRef12115,583,844 - 115,593,353 (+)NCBIHuRef
CHM1_112118,541,591 - 118,551,104 (+)NCBICHM1_1
Pebp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395117,420,716 - 117,425,629 (-)NCBIGRCm39mm39
GRCm39 Ensembl5117,420,719 - 117,425,690 (-)Ensembl
GRCm385117,282,651 - 117,287,564 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5117,282,654 - 117,287,625 (-)EnsemblGRCm38mm10GRCm38
MGSCv375117,732,660 - 117,737,573 (-)NCBIGRCm37mm9NCBIm37
MGSCv365117,543,681 - 117,548,594 (-)NCBImm8
Celera5114,378,177 - 114,383,080 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map556.88NCBI
Pebp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21239,302,864 - 39,307,064 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1239,302,840 - 39,307,862 (+)Ensembl
Rnor_6.01245,026,948 - 45,031,148 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1245,026,886 - 45,031,145 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01246,846,901 - 46,851,101 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41240,491,393 - 40,495,593 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11240,354,780 - 40,358,980 (+)NCBI
Celera1240,944,260 - 40,948,460 (+)NCBICelera
Cytogenetic Map12q16NCBI
PEBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112119,096,328 - 119,105,832 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12119,093,952 - 119,105,054 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012115,716,953 - 115,726,412 (+)NCBIMhudiblu_PPA_v0panPan3
PEBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12614,522,124 - 14,526,370 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2614,500,074 - 14,529,354 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2614,515,188 - 14,519,426 (+)NCBI
ROS_Cfam_1.02614,784,007 - 14,788,255 (+)NCBI
ROS_Cfam_1.0 Ensembl2614,778,114 - 14,791,198 (+)Ensembl
UMICH_Zoey_3.12614,748,852 - 14,753,083 (+)NCBI
UNSW_CanFamBas_1.02614,821,104 - 14,825,345 (+)NCBI
UU_Cfam_GSD_1.02614,856,217 - 14,860,448 (+)NCBI
Pebp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118147,817,772 - 147,824,111 (-)NCBI
SpeTri2.0NW_0049366682,316,661 - 2,323,015 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PEBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11434,523,901 - 34,530,238 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21436,685,085 - 36,691,392 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PEBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111113,469,845 - 113,479,177 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037131,619,275 - 131,630,575 (-)NCBIVero_WHO_p1.0
Pebp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474715,340,020 - 15,346,960 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013520338   ⟹   XP_013375792
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545513,217,012 - 13,222,370 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013375792 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013375792   ⟸   XM_013520338
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016201 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000023621 UniProtKB/TrEMBL
  ENSCLAP00000023622 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000023845 UniProtKB/TrEMBL
  ENSCLAT00000023846 ENTREZGENE, UniProtKB/TrEMBL
NCBI Gene Pebp1 ENTREZGENE
UniProt A0A8C2W141_CHILA UniProtKB/TrEMBL
  A0A8C2W1K6_CHILA UniProtKB/TrEMBL