Bcat2 (branched chain amino acid transaminase 2) - Rat Genome Database

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Gene: Bcat2 (branched chain amino acid transaminase 2) Chinchilla lanigera
Analyze
Symbol: Bcat2
Name: branched chain amino acid transaminase 2
RGD ID: 8899589
Description: ENCODES a protein that exhibits branched-chain-amino-acid transaminase activity (ortholog); INVOLVED IN branched-chain amino acid catabolic process (ortholog); branched-chain amino acid metabolic process (ortholog); cellular response to leukemia inhibitory factor (ortholog); PARTICIPATES IN valine, leucine and isoleucine biosynthetic pathway; valine, leucine and isoleucine degradation pathway; ASSOCIATED WITH HYPERVALINEMIA AND HYPERLEUCINE-ISOLEUCINEMIA (ortholog); maple syrup urine disease (ortholog); pre-malignant neoplasm (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: branched chain amino-acid transaminase 2, mitochondrial; branched-chain-amino-acid aminotransferase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,785,253 - 1,797,899 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,785,253 - 1,796,838 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
mitochondrion  (ISO)
nucleus  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Bcat2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,785,253 - 1,797,899 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,785,253 - 1,796,838 (+)NCBIChiLan1.0ChiLan1.0
BCAT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1948,795,062 - 48,811,029 (-)EnsemblGRCh38hg38GRCh38
GRCh381948,795,064 - 48,811,029 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371949,298,321 - 49,314,286 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361953,990,131 - 54,006,113 (-)NCBINCBI36hg18NCBI36
Build 341953,990,131 - 54,006,113NCBI
Celera1946,166,129 - 46,182,134 (-)NCBI
Cytogenetic Map19q13.33NCBI
HuRef1945,677,853 - 45,693,853 (-)NCBIHuRef
CHM1_11949,300,194 - 49,316,125 (-)NCBICHM1_1
Bcat2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39745,218,391 - 45,239,134 (+)NCBIGRCm39mm39
GRCm39 Ensembl745,219,577 - 45,239,135 (+)Ensembl
GRCm38745,568,967 - 45,589,710 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,570,153 - 45,589,711 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,825,733 - 52,845,078 (+)NCBIGRCm37mm9NCBIm37
MGSCv36745,438,405 - 45,457,750 (+)NCBImm8
Celera741,023,580 - 41,045,483 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.36NCBI
Bcat2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2196,040,407 - 96,060,008 (+)NCBI
Rnor_6.0 Ensembl1101,554,642 - 101,572,080 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01101,553,900 - 101,572,103 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01102,633,422 - 102,650,883 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4196,038,287 - 96,055,622 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1196,116,397 - 96,133,732 (+)NCBI
Celera190,298,174 - 90,315,510 (+)NCBICelera
Cytogenetic Map1q22NCBI
BCAT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11954,945,156 - 54,962,887 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1954,945,157 - 54,962,887 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01945,793,433 - 45,809,546 (-)NCBIMhudiblu_PPA_v0panPan3
BCAT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,539,125 - 107,549,286 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,538,465 - 107,549,234 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1107,061,565 - 107,071,746 (+)NCBI
ROS_Cfam_1.01108,063,749 - 108,073,941 (+)NCBI
UMICH_Zoey_3.11107,730,663 - 107,740,841 (+)NCBI
UNSW_CanFamBas_1.01107,377,548 - 107,387,729 (+)NCBI
UU_Cfam_GSD_1.01108,213,156 - 108,223,338 (+)NCBI
Bcat2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,247,666 - 21,259,021 (-)NCBI
SpeTri2.0NW_0049366642,865,804 - 2,890,038 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCAT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,107,681 - 54,143,602 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,107,682 - 54,123,595 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,855,038 - 49,870,815 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BCAT2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,031,003 - 42,051,770 (-)NCBI
ChlSab1.1 Ensembl642,030,984 - 42,049,050 (-)Ensembl
Bcat2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248325,132,667 - 5,147,099 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000022337   ⟹   ENSCLAP00000022132
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555591,785,253 - 1,797,899 (+)Ensembl
RefSeq Acc Id: XM_013509037   ⟹   XP_013364491
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555591,785,253 - 1,796,838 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013364491 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013364491   ⟸   XM_013509037
- Sequence:
RefSeq Acc Id: ENSCLAP00000022132   ⟸   ENSCLAT00000022337


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015177 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000022132 ENTREZGENE
Ensembl Transcript ENSCLAT00000022337 ENTREZGENE
NCBI Gene Bcat2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Bcat2  branched chain amino acid transaminase 2    branched chain amino-acid transaminase 2, mitochondrial  Symbol and/or name change 5135510 APPROVED