Atf7ip2 (activating transcription factor 7 interacting protein 2) - Rat Genome Database

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Gene: Atf7ip2 (activating transcription factor 7 interacting protein 2) Chinchilla lanigera
Analyze
Symbol: Atf7ip2
Name: activating transcription factor 7 interacting protein 2
RGD ID: 8897146
Description: ASSOCIATED WITH Charcot-Marie-Tooth disease type 1C (ortholog); genetic disease (ortholog); Landau-Kleffner syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: activating transcription factor 7-interacting protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554427,894,518 - 7,941,580 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554427,896,626 - 7,975,579 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atf7ip2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554427,894,518 - 7,941,580 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554427,896,626 - 7,975,579 (-)NCBIChiLan1.0ChiLan1.0
ATF7IP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381610,386,061 - 10,483,638 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1610,326,434 - 10,483,638 (+)EnsemblGRCh38hg38GRCh38
GRCh371610,479,918 - 10,577,495 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361610,430,226 - 10,484,996 (+)NCBINCBI36Build 36hg18NCBI36
Build 341610,430,225 - 10,484,995NCBI
Celera1610,690,093 - 10,744,829 (+)NCBICelera
Cytogenetic Map16p13.2-p13.13NCBI
HuRef1610,399,242 - 10,496,846 (+)NCBIHuRef
CHM1_11610,479,841 - 10,577,424 (+)NCBICHM1_1
T2T-CHM13v2.01610,421,735 - 10,519,259 (+)NCBIT2T-CHM13v2.0
Atf7ip2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391610,010,513 - 10,068,595 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1610,010,576 - 10,069,342 (+)EnsemblGRCm39 Ensembl
GRCm381610,192,649 - 10,250,731 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1610,192,712 - 10,251,478 (+)EnsemblGRCm38mm10GRCm38
MGSCv371610,192,999 - 10,243,144 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361610,106,290 - 10,156,629 (+)NCBIMGSCv36mm8
Celera1610,826,131 - 10,876,320 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map165.5NCBI
Atf7ip2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8105,909,898 - 5,952,844 (-)NCBIGRCr8
mRatBN7.2105,403,099 - 5,445,989 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl105,403,105 - 5,446,142 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1010,099,399 - 10,142,039 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0109,620,576 - 9,663,387 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0105,258,752 - 5,301,500 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0105,476,205 - 5,519,893 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl105,476,966 - 5,511,955 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0104,297,228 - 4,340,498 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4105,356,438 - 5,399,673 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera104,419,013 - 4,461,981 (-)NCBICelera
Cytogenetic Map10q11NCBI
ATF7IP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21810,850,826 - 11,018,846 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11614,626,607 - 14,794,674 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0169,314,019 - 9,411,940 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11610,545,087 - 10,642,209 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1610,589,012 - 10,642,209 (+)Ensemblpanpan1.1panPan2
ATF7IP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1632,078,700 - 32,128,491 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl632,079,186 - 32,118,658 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha633,460,859 - 33,516,213 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0632,261,952 - 32,317,341 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl632,261,957 - 32,317,506 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1632,074,922 - 32,130,345 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0631,947,684 - 32,002,777 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0632,373,245 - 32,428,680 (-)NCBIUU_Cfam_GSD_1.0
Atf7ip2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344110,949,807 - 110,990,344 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365308,796,077 - 8,830,847 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365308,795,303 - 8,832,683 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATF7IP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl332,523,463 - 32,598,855 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1332,523,462 - 32,598,946 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2333,324,469 - 33,378,479 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATF7IP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.159,880,656 - 9,972,528 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl59,924,868 - 9,973,606 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606820,193,373 - 20,286,510 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atf7ip2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248247,783,337 - 7,855,024 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248247,779,900 - 7,880,243 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000022545   ⟹   ENSCLAP00000022340
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554427,894,518 - 7,941,580 (-)Ensembl
RefSeq Acc Id: XM_005391191   ⟹   XP_005391248
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554427,896,626 - 7,975,579 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005391192   ⟹   XP_005391249
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554427,896,626 - 7,975,123 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005391193   ⟹   XP_005391250
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554427,896,626 - 7,975,531 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005391194   ⟹   XP_005391251
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554427,896,626 - 7,975,303 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005391195   ⟹   XP_005391252
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554427,896,626 - 7,975,303 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518012   ⟹   XP_013373466
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554427,896,626 - 7,975,328 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518013   ⟹   XP_013373467
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554427,897,787 - 7,975,579 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005391248   ⟸   XM_005391191
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W5Q6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005391250   ⟸   XM_005391193
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W5Q6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005391251   ⟸   XM_005391194
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W5Q6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005391252   ⟸   XM_005391195
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W5Q6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005391249   ⟸   XM_005391192
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W5Q6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373466   ⟸   XM_013518012
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W5Q6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373467   ⟸   XM_013518013
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000022340   ⟸   ENSCLAT00000022545
Protein Domains
ATF7-interacting protein protein binding   Fibronectin type-III


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015323 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAG00000023738 ENTREZGENE
Ensembl Transcript ENSCLAT00000022545 ENTREZGENE
  ENSCLAT00000022545.1 UniProtKB/TrEMBL
  ENSCLAT00000032282 ENTREZGENE
InterPro ATF7-int UniProtKB/TrEMBL
  ATF7IP_BD UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
NCBI Gene Atf7ip2 ENTREZGENE
PANTHER PTHR23210 UniProtKB/TrEMBL
  PTHR23210:SF23 UniProtKB/TrEMBL
Pfam ATF7IP_BD UniProtKB/TrEMBL
  fn3_4 UniProtKB/TrEMBL
UniProt A0A8C2W5Q6 ENTREZGENE, UniProtKB/TrEMBL