Cldn16 (claudin 16) - Rat Genome Database

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Gene: Cldn16 (claudin 16) Chinchilla lanigera
Analyze
Symbol: Cldn16
Name: claudin 16
RGD ID: 8896979
Description: INVOLVED IN positive regulation of calcium ion transport (ortholog); transepithelial transport (ortholog); ASSOCIATED WITH genetic disease (ortholog); Hypercalciuria (ortholog); hypertension (ortholog); FOUND IN bicellular tight junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: claudin-16
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542017,693,573 - 17,715,211 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542017,684,752 - 17,714,639 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cldn16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542017,693,573 - 17,715,211 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542017,684,752 - 17,714,639 (-)NCBIChiLan1.0ChiLan1.0
CLDN16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383190,290,361 - 190,412,138 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3190,322,541 - 190,412,138 (+)EnsemblGRCh38hg38GRCh38
GRCh373190,008,150 - 190,129,927 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363191,588,535 - 191,611,027 (+)NCBINCBI36Build 36hg18NCBI36
Build 343191,588,542 - 191,611,035NCBI
Celera3188,536,131 - 188,560,428 (+)NCBICelera
Cytogenetic Map3q28NCBI
HuRef3187,505,460 - 187,529,668 (+)NCBIHuRef
CHM1_13190,068,819 - 190,093,110 (+)NCBICHM1_1
T2T-CHM13v2.03193,106,655 - 193,228,453 (+)NCBIT2T-CHM13v2.0
Cldn16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391626,281,885 - 26,301,515 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1626,281,885 - 26,301,515 (+)EnsemblGRCm39 Ensembl
GRCm381626,463,135 - 26,482,765 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1626,463,135 - 26,482,765 (+)EnsemblGRCm38mm10GRCm38
MGSCv371626,463,246 - 26,482,853 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361626,378,509 - 26,398,125 (+)NCBIMGSCv36mm8
Celera1627,006,449 - 27,026,198 (+)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1618.1NCBI
Cldn16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81187,795,106 - 87,814,396 (-)NCBIGRCr8
mRatBN7.21174,290,298 - 74,309,588 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1174,290,298 - 74,309,588 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1183,098,900 - 83,118,197 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01175,733,942 - 75,753,237 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01174,795,644 - 74,814,832 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01177,683,942 - 77,703,232 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1177,681,794 - 77,703,255 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01183,013,610 - 83,035,155 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41176,313,985 - 76,334,074 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11176,371,576 - 76,391,663 (-)NCBI
Celera1173,208,029 - 73,227,202 (-)NCBICelera
Cytogenetic Map11q22NCBI
CLDN16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22188,257,031 - 188,282,805 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13188,261,748 - 188,287,522 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03187,141,710 - 187,436,909 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13195,964,400 - 195,990,065 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3195,964,178 - 195,990,065 (+)Ensemblpanpan1.1panPan2
CLDN16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13422,392,108 - 22,414,250 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3422,317,474 - 22,412,665 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3426,433,682 - 26,507,764 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03422,274,616 - 22,348,804 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3422,252,125 - 22,347,219 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13422,295,774 - 22,370,096 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03422,282,808 - 22,357,000 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03422,524,777 - 22,598,893 (+)NCBIUU_Cfam_GSD_1.0
Cldn16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602113,913,789 - 113,933,582 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365785,774 - 25,350 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365785,774 - 25,621 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13127,808,599 - 127,830,717 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113127,808,599 - 127,831,081 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213137,065,482 - 137,087,589 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLDN16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11584,529,660 - 84,619,707 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1584,593,857 - 84,619,660 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604158,118,538 - 58,210,830 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cldn16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473066,741,550 - 66,768,921 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473066,741,687 - 66,768,589 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000018567   ⟹   ENSCLAP00000018387
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542017,693,573 - 17,715,211 (-)Ensembl
RefSeq Acc Id: XM_005383225   ⟹   XP_005383282
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542017,695,254 - 17,714,639 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005383226   ⟹   XP_005383283
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542017,684,752 - 17,714,507 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005383282 (Get FASTA)   NCBI Sequence Viewer  
  XP_005383283 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000018387
  ENSCLAP00000018387.1
Reference Protein Sequences
RefSeq Acc Id: XP_005383283   ⟸   XM_005383226
- UniProtKB: A0A8C2VNR6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005383282   ⟸   XM_005383225
- UniProtKB: A0A8C2VNR6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000018387   ⟸   ENSCLAT00000018567


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012605 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018567 ENTREZGENE
  ENSCLAT00000018567.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro Claudin UniProtKB/TrEMBL
  Claudin16 UniProtKB/TrEMBL
  Claudin_CS UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
NCBI Gene Cldn16 ENTREZGENE
PANTHER PTHR12002 UniProtKB/TrEMBL
  PTHR12002:SF56 UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/TrEMBL
PRINTS CLAUDIN UniProtKB/TrEMBL
  CLAUDIN16 UniProtKB/TrEMBL
PROSITE CLAUDIN UniProtKB/TrEMBL
UniProt A0A8C2VNR6 ENTREZGENE, UniProtKB/TrEMBL