Ahi1 (Abelson helper integration site 1) - Rat Genome Database

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Gene: Ahi1 (Abelson helper integration site 1) Chinchilla lanigera
Analyze
Symbol: Ahi1
Name: Abelson helper integration site 1
RGD ID: 8896831
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cell surface receptor protein tyrosine kinase signaling pathway (ortholog); cilium assembly (ortholog); embryonic brain development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); cerebellar disease (ortholog); FOUND IN adherens junction (ortholog); cell-cell junction (ortholog); centriole (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: jouberin
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554391,276,760 - 1,474,202 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554391,277,185 - 1,460,296 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ahi1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554391,276,760 - 1,474,202 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554391,277,185 - 1,460,296 (+)NCBIChiLan1.0ChiLan1.0
AHI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386135,283,532 - 135,497,740 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6135,283,407 - 135,498,434 (-)EnsemblGRCh38hg38GRCh38
GRCh376135,604,670 - 135,818,878 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366135,646,817 - 135,860,576 (-)NCBINCBI36Build 36hg18NCBI36
Build 346135,646,817 - 135,860,576NCBI
Celera6136,345,472 - 136,559,269 (-)NCBICelera
Cytogenetic Map6q23.3NCBI
HuRef6133,169,009 - 133,382,975 (-)NCBIHuRef
CHM1_16135,867,357 - 136,081,325 (-)NCBICHM1_1
T2T-CHM13v2.06136,471,820 - 136,685,994 (-)NCBIT2T-CHM13v2.0
Ahi1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391020,827,274 - 20,956,328 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1020,828,446 - 20,956,328 (+)EnsemblGRCm39 Ensembl
GRCm381020,952,232 - 21,080,429 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1020,952,547 - 21,080,429 (+)EnsemblGRCm38mm10GRCm38
MGSCv371020,672,391 - 20,800,235 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361020,642,080 - 20,769,845 (+)NCBIMGSCv36mm8
Celera1020,846,024 - 20,981,336 (+)NCBICelera
Cytogenetic Map10A3NCBI
cM Map109.75NCBI
Ahi1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8117,580,859 - 17,711,775 (+)NCBIGRCr8
mRatBN7.2115,762,485 - 15,891,213 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl115,762,462 - 15,891,041 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx115,516,117 - 15,645,446 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0121,518,001 - 21,647,337 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0115,742,325 - 15,871,051 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0116,478,127 - 16,601,769 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl116,478,127 - 16,601,769 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0118,952,969 - 19,086,123 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0119,111,106 - 19,149,884 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4116,332,801 - 16,454,055 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1116,332,862 - 16,454,114 (+)NCBI
Celera114,188,321 - 14,307,100 (+)NCBICelera
Cytogenetic Map1p12NCBI
AHI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25155,261,308 - 155,484,081 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16153,166,815 - 153,379,460 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06133,055,026 - 133,273,591 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16137,149,457 - 137,366,731 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6137,156,237 - 137,361,232 (-)Ensemblpanpan1.1panPan2
AHI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1127,966,101 - 28,199,163 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl127,998,874 - 28,198,351 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha128,845,716 - 29,079,414 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0128,122,122 - 28,354,873 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl128,154,194 - 28,354,314 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1128,008,276 - 28,240,745 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0127,888,338 - 28,120,623 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0128,198,308 - 28,432,026 (-)NCBIUU_Cfam_GSD_1.0
Ahi1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946123,101,413 - 123,278,028 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365602,881,977 - 3,038,725 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365602,881,631 - 3,057,256 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AHI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl128,566,266 - 28,760,468 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1128,566,279 - 28,760,471 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2132,048,945 - 32,243,734 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AHI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11337,918,902 - 38,138,838 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1337,924,440 - 38,139,366 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604010,124,102 - 10,342,579 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ahi1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248862,189,655 - 2,397,364 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248862,189,753 - 2,403,174 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000004288   ⟹   ENSCLAP00000004206
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554391,276,760 - 1,474,202 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000004289   ⟹   ENSCLAP00000004207
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554391,276,760 - 1,458,979 (+)Ensembl
RefSeq Acc Id: XM_005390486   ⟹   XP_005390543
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554391,277,185 - 1,460,296 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013517380   ⟹   XP_013372834
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554391,277,185 - 1,460,296 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005390543 (Get FASTA)   NCBI Sequence Viewer  
  XP_013372834 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000004206
  ENSCLAP00000004206.1
  ENSCLAP00000004207
  ENSCLAP00000004207.1
RefSeq Acc Id: XP_005390543   ⟸   XM_005390486
- UniProtKB: A0A8C2UV89 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013372834   ⟸   XM_013517380
- UniProtKB: A0A8C2UV89 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000004206   ⟸   ENSCLAT00000004288
RefSeq Acc Id: ENSCLAP00000004207   ⟸   ENSCLAT00000004289
Protein Domains
SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003003 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004288 ENTREZGENE
  ENSCLAT00000004288.1 UniProtKB/TrEMBL
  ENSCLAT00000004289 ENTREZGENE
  ENSCLAT00000004289.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro AHI1_SH3 UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Ahi1 ENTREZGENE
PANTHER JOUBERIN UniProtKB/TrEMBL
  JOUBERIN UniProtKB/TrEMBL
Pfam SH3_1 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PRINTS SH3DOMAIN UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART SH3 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/TrEMBL
  SSF50978 UniProtKB/TrEMBL
UniProt A0A8C2UQ49_CHILA UniProtKB/TrEMBL
  A0A8C2UV89 ENTREZGENE, UniProtKB/TrEMBL