Dct (dopachrome tautomerase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Dct (dopachrome tautomerase) Chinchilla lanigera
Analyze
Symbol: Dct
Name: dopachrome tautomerase
RGD ID: 8896681
Description: ENCODES a protein that exhibits dopachrome isomerase activity (ortholog); INVOLVED IN cell development (ortholog); developmental pigmentation (ortholog); melanin biosynthetic process (ortholog); PARTICIPATES IN alkaptonuria pathway; disulfiram pharmacodynamics pathway; dopamine beta-hydroxylase deficiency pathway; ASSOCIATED WITH Albinism (ortholog); Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); holoprosencephaly 5 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: L-dopachrome tautomerase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540415,359,402 - 15,395,535 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540415,359,402 - 15,395,556 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Dct
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540415,359,402 - 15,395,535 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540415,359,402 - 15,395,556 (+)NCBIChiLan1.0ChiLan1.0
DCT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1394,436,811 - 94,479,682 (-)EnsemblGRCh38hg38GRCh38
GRCh381394,436,811 - 94,549,406 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371395,089,065 - 95,201,660 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361393,889,836 - 93,929,924 (-)NCBINCBI36hg18NCBI36
Build 341393,889,839 - 93,929,924NCBI
Celera1375,940,079 - 75,980,144 (-)NCBI
Cytogenetic Map13q32.1NCBI
HuRef1375,688,784 - 75,728,851 (-)NCBIHuRef
CHM1_11395,061,346 - 95,101,397 (-)NCBICHM1_1
Dct
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914118,250,202 - 118,289,658 (-)NCBIGRCm39mm39
GRCm39 Ensembl14118,250,202 - 118,289,656 (-)Ensembl
GRCm3814118,012,790 - 118,052,246 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14118,012,790 - 118,052,244 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714118,412,012 - 118,451,468 (-)NCBIGRCm37mm9NCBIm37
MGSCv3614116,895,153 - 116,934,531 (-)NCBImm8
Celera14116,565,242 - 116,604,520 (-)NCBICelera
Cytogenetic Map14E4NCBI
cM Map1461.6NCBI
Dct
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21595,062,006 - 95,100,863 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1595,062,003 - 95,100,836 (-)Ensembl
Rnor_6.015103,208,174 - 103,245,033 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15103,208,258 - 103,244,494 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015106,647,067 - 106,681,458 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415102,798,699 - 102,832,240 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1593,915,976 - 93,952,737 (-)NCBICelera
Cytogenetic Map15q24NCBI
DCT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11394,773,794 - 94,886,791 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1394,773,794 - 94,816,083 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01375,590,366 - 75,730,956 (-)NCBIMhudiblu_PPA_v0panPan3
DCT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12245,271,709 - 45,305,272 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2245,271,709 - 45,305,346 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2245,058,426 - 45,092,104 (-)NCBI
ROS_Cfam_1.02245,702,218 - 45,736,012 (-)NCBI
ROS_Cfam_1.0 Ensembl2245,702,218 - 45,736,086 (-)Ensembl
UMICH_Zoey_3.12245,356,018 - 45,389,781 (-)NCBI
UNSW_CanFamBas_1.02245,396,691 - 45,430,530 (-)NCBI
UU_Cfam_GSD_1.02245,406,488 - 45,440,246 (-)NCBI
Dct
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945180,841,728 - 180,877,214 (-)NCBI
SpeTri2.0NW_00493647215,074,947 - 15,110,427 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1163,584,866 - 63,678,314 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11163,584,865 - 63,647,486 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21169,660,271 - 69,730,937 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DCT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1373,246,161 - 73,315,574 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl373,274,621 - 73,313,905 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604629,653,840 - 29,766,858 (-)NCBIVero_WHO_p1.0
Dct
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248791,241,593 - 1,346,765 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000005036   ⟹   ENSCLAP00000004944
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540415,359,402 - 15,395,535 (+)Ensembl
RefSeq Acc Id: XM_005374234   ⟹   XP_005374291
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540415,359,402 - 15,395,556 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374291 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005374291   ⟸   XM_005374234
- Sequence:
RefSeq Acc Id: ENSCLAP00000004944   ⟸   ENSCLAT00000005036


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003506 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000004944 ENTREZGENE
Ensembl Transcript ENSCLAT00000005036 ENTREZGENE
NCBI Gene Dct ENTREZGENE