Mettl21c (methyltransferase 21C, AARS1 lysine) - Rat Genome Database

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Gene: Mettl21c (methyltransferase 21C, AARS1 lysine) Chinchilla lanigera
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Symbol: Mettl21c
Name: methyltransferase 21C, AARS1 lysine
RGD ID: 8896209
Description: ENCODES a protein that exhibits heat shock protein binding (ortholog); protein-lysine N-methyltransferase activity (ortholog); INVOLVED IN cellular response to dexamethasone stimulus (ortholog); hormone-mediated apoptotic signaling pathway (ortholog); peptidyl-lysine methylation (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); holoprosencephaly 5 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: methyltransferase like 21C; protein-lysine methyltransferase METTL21C
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554048,447,359 - 8,460,847 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554048,447,359 - 8,460,853 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Mettl21c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554048,447,359 - 8,460,847 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554048,447,359 - 8,460,853 (+)NCBIChiLan1.0ChiLan1.0
METTL21C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813102,685,747 - 102,704,300 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl13102,685,747 - 102,695,044 (-)EnsemblGRCh38hg38GRCh38
GRCh3713103,338,097 - 103,347,394 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613102,136,098 - 102,144,855 (-)NCBINCBI36hg18NCBI36
Celera1384,180,440 - 84,189,196 (-)NCBI
Cytogenetic Map13q33.1NCBI
HuRef1383,930,631 - 83,939,404 (-)NCBIHuRef
CHM1_113103,307,550 - 103,316,292 (-)NCBICHM1_1
T2T-CHM13v2.013101,901,727 - 101,913,115 (-)NCBI
Mettl21c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39144,048,559 - 44,081,745 (-)NCBIGRCm39mm39
GRCm39 Ensembl144,048,568 - 44,059,194 (-)Ensembl
GRCm38144,009,399 - 44,042,620 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl144,009,408 - 44,020,034 (-)EnsemblGRCm38mm10GRCm38
MGSCv37144,066,253 - 44,076,851 (-)NCBIGRCm37mm9NCBIm37
MGSCv36143,953,954 - 43,964,552 (-)NCBImm8
Celera144,352,461 - 44,363,059 (-)NCBICelera
Cytogenetic Map1C1.1NCBI
Mettl21c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2946,130,451 - 46,145,128 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl946,134,001 - 46,145,112 (-)Ensembl
Rnor_6.0950,750,971 - 50,762,082 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl950,750,971 - 50,762,082 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0950,415,610 - 50,426,721 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4943,072,035 - 43,083,147 (-)NCBIRGSC3.4rn4RGSC3.4
Celera943,846,552 - 43,857,665 (-)NCBICelera
Cytogenetic Map9q22NCBI
METTL21C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.113102,981,536 - 102,990,282 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13102,981,536 - 102,990,336 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01383,845,572 - 83,855,215 (-)NCBIMhudiblu_PPA_v0panPan3
METTL21C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12252,181,222 - 52,194,859 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2252,182,115 - 52,190,163 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2251,961,007 - 51,972,053 (-)NCBI
ROS_Cfam_1.02252,632,209 - 52,643,253 (-)NCBI
ROS_Cfam_1.0 Ensembl2252,633,037 - 52,641,528 (-)Ensembl
UMICH_Zoey_3.12252,281,430 - 52,292,469 (-)NCBI
UNSW_CanFamBas_1.02252,297,679 - 52,308,687 (-)NCBI
UU_Cfam_GSD_1.02252,338,746 - 52,349,804 (-)NCBI
Mettl21c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945187,587,069 - 187,600,029 (-)NCBI
SpeTri2.0NW_0049364728,355,075 - 8,366,229 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
METTL21C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1171,008,846 - 71,020,730 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11171,008,854 - 71,021,640 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21178,325,626 - 78,335,286 (-)NCBISscrofa10.2Sscrofa10.2susScr3
METTL21C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1381,240,899 - 81,251,111 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl381,241,412 - 81,250,502 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604637,778,090 - 37,787,841 (-)NCBIVero_WHO_p1.0
Mettl21c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247938,774,561 - 8,780,792 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247938,772,999 - 8,782,049 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000002931   ⟹   ENSCLAP00000002874
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554048,447,359 - 8,460,847 (+)Ensembl
RefSeq Acc Id: XM_005374030   ⟹   XP_005374087
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554048,447,359 - 8,460,853 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005374031   ⟹   XP_005374088
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554048,451,925 - 8,460,853 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374087 (Get FASTA)   NCBI Sequence Viewer  
  XP_005374088 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005374087   ⟸   XM_005374030
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005374088   ⟸   XM_005374031
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000002874   ⟸   ENSCLAT00000002931


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002066 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000002874 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000002931 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.150 UniProtKB/TrEMBL
InterPro Methyltransf_16 UniProtKB/TrEMBL
  SAM-dependent_MTases UniProtKB/TrEMBL
NCBI Gene Mettl21c ENTREZGENE
PANTHER PTHR14614 UniProtKB/TrEMBL
Pfam Methyltransf_16 UniProtKB/TrEMBL
Superfamily-SCOP SSF53335 UniProtKB/TrEMBL
UniProt A0A8C2UM00_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-05-26 Mettl21c  methyltransferase 21C, AARS1 lysine  Mettl21c  methyltransferase like 21C  Symbol and/or name change 5135510 APPROVED