Spa17 (sperm autoantigenic protein 17) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Spa17 (sperm autoantigenic protein 17) Chinchilla lanigera
Analyze
Symbol: Spa17
Name: sperm autoantigenic protein 17
RGD ID: 8895466
Description: ASSOCIATED WITH Chromosome 11, Partial Trisomy 11q (ortholog); Dwarfism (ortholog); genetic disease (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); external side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sperm surface protein Sp17
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541225,741,228 - 25,753,903 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541225,741,369 - 25,753,681 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Spa17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541225,741,228 - 25,753,903 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541225,741,369 - 25,753,681 (+)NCBIChiLan1.0ChiLan1.0
SPA17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811124,673,904 - 124,697,518 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11124,673,844 - 124,697,518 (+)EnsemblGRCh38hg38GRCh38
GRCh3711124,543,800 - 124,567,414 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611124,048,950 - 124,069,900 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411124,048,949 - 124,069,895NCBI
Celera11121,703,917 - 121,724,867 (+)NCBICelera
Cytogenetic Map11q24.2NCBI
HuRef11120,486,154 - 120,507,105 (+)NCBIHuRef
CHM1_111124,429,875 - 124,450,825 (+)NCBICHM1_1
T2T-CHM13v2.011124,702,562 - 124,726,178 (+)NCBIT2T-CHM13v2.0
Spa17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39937,514,590 - 37,525,018 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl937,514,586 - 37,525,018 (-)EnsemblGRCm39 Ensembl
GRCm38937,603,294 - 37,613,916 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl937,603,290 - 37,613,722 (-)EnsemblGRCm38mm10GRCm38
MGSCv37937,410,883 - 37,421,207 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36937,352,969 - 37,363,285 (-)NCBIMGSCv36mm8
Celera934,820,392 - 34,830,716 (-)NCBICelera
Cytogenetic Map9A4NCBI
cM Map920.78NCBI
Spa17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8845,496,175 - 45,507,262 (-)NCBIGRCr8
mRatBN7.2837,307,432 - 37,318,519 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl837,307,557 - 37,318,639 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx841,324,053 - 41,332,966 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0839,607,116 - 39,616,029 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0837,469,996 - 37,478,909 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0840,066,954 - 40,078,131 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl840,067,076 - 40,078,165 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0840,067,778 - 40,078,956 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4838,843,007 - 38,852,080 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1838,851,772 - 38,860,846 (-)NCBI
Celera837,138,678 - 37,147,723 (+)NCBICelera
Cytogenetic Map8q22NCBI
SPA17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29125,370,045 - 125,394,535 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111126,474,917 - 126,495,857 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011119,501,604 - 119,526,103 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111123,416,864 - 123,437,823 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11123,416,725 - 123,437,818 (+)Ensemblpanpan1.1panPan2
SPA17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.159,719,222 - 9,731,521 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl59,719,241 - 9,730,913 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha59,764,084 - 9,776,377 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.059,658,863 - 9,671,169 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl59,658,882 - 9,670,560 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.159,731,014 - 9,743,307 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.059,701,457 - 9,713,751 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.059,737,971 - 9,750,271 (-)NCBIUU_Cfam_GSD_1.0
Spa17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947106,894,523 - 106,916,177 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367431,141,879 - 1,163,720 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SPA17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl951,918,916 - 51,931,759 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1951,918,916 - 51,931,459 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2957,436,391 - 57,448,928 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103215961
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1955,994,382 - 55,996,655 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604816,475,686 - 16,482,936 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spa17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624927678,260 - 691,797 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624927678,390 - 691,963 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000023943   ⟹   ENSCLAP00000023717
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541225,741,228 - 25,753,903 (+)Ensembl
RefSeq Acc Id: XM_005378430   ⟹   XP_005378487
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541225,741,369 - 25,753,681 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005378487 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000023717
  ENSCLAP00000023717.1
Reference Protein Sequences
RefSeq Acc Id: XP_005378487   ⟸   XM_005378430
- UniProtKB: A0A8C2W1D0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000023717   ⟸   ENSCLAT00000023943
Protein Domains
RIIa


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016272 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000023943 ENTREZGENE
  ENSCLAT00000023943.1 UniProtKB/TrEMBL
Gene3D-CATH cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain UniProtKB/TrEMBL
  iswi atpase UniProtKB/TrEMBL
InterPro cAMP_dep_PK_reg_su_I/II_a/b UniProtKB/TrEMBL
  DD_CABYR_SP17 UniProtKB/TrEMBL
  IQ_motif_EF-hand-BS UniProtKB/TrEMBL
  Sp17 UniProtKB/TrEMBL
NCBI Gene Spa17 ENTREZGENE
PANTHER NEUROMODULIN UniProtKB/TrEMBL
  ZGC:153721 UniProtKB/TrEMBL
Pfam PF00612 UniProtKB/TrEMBL
  RIIa UniProtKB/TrEMBL
PIRSF Sp17 UniProtKB/TrEMBL
PROSITE PS50096 UniProtKB/TrEMBL
SMART RIIa UniProtKB/TrEMBL
  SM00015 UniProtKB/TrEMBL
Superfamily-SCOP Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit UniProtKB/TrEMBL
UniProt A0A8C2W1D0 ENTREZGENE, UniProtKB/TrEMBL