B4galt5 (beta-1,4-galactosyltransferase 5) - Rat Genome Database

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Gene: B4galt5 (beta-1,4-galactosyltransferase 5) Chinchilla lanigera
Analyze
Symbol: B4galt5
Name: beta-1,4-galactosyltransferase 5
RGD ID: 8894373
Description: ENCODES a protein that exhibits N-acetyllactosamine synthase activity (ortholog); UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity (ortholog); INVOLVED IN central nervous system myelination (ortholog); central nervous system neuron axonogenesis (ortholog); ganglioside biosynthetic process via lactosylceramide (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); juvenile rheumatoid arthritis (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554458,534,220 - 8,559,672 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554458,471,684 - 8,559,672 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
B4galt5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554458,534,220 - 8,559,672 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554458,471,684 - 8,559,672 (+)NCBIChiLan1.0ChiLan1.0
B4GALT5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2049,632,945 - 49,713,878 (-)EnsemblGRCh38hg38GRCh38
GRCh382049,632,945 - 49,713,878 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372048,249,482 - 48,330,415 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362047,682,889 - 47,763,745 (-)NCBINCBI36hg18NCBI36
Build 342047,682,888 - 47,763,745NCBI
Celera2044,954,098 - 45,035,021 (-)NCBI
Cytogenetic Map20q13.13NCBI
HuRef2044,998,184 - 45,021,953 (-)NCBIHuRef
CHM1_12048,154,191 - 48,235,100 (-)NCBICHM1_1
B4galt5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392167,140,364 - 167,191,155 (-)NCBIGRCm39mm39
GRCm39 Ensembl2167,140,364 - 167,191,103 (-)Ensembl
GRCm382167,298,444 - 167,349,178 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2167,298,444 - 167,349,183 (-)EnsemblGRCm38mm10GRCm38
MGSCv372167,123,944 - 167,174,678 (-)NCBIGRCm37mm9NCBIm37
MGSCv362166,992,266 - 167,040,388 (-)NCBImm8
Celera2173,239,050 - 173,289,822 (-)NCBICelera
Cytogenetic Map2H3NCBI
B4galt5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23156,018,056 - 156,033,983 (-)NCBI
Rnor_6.0 Ensembl3164,039,731 - 164,095,878 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.03164,039,731 - 164,055,561 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03170,196,325 - 170,211,612 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43158,440,189 - 158,449,419 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13158,349,006 - 158,397,606 (-)NCBI
Celera3154,599,548 - 154,615,476 (-)NCBICelera
Cytogenetic Map3q42NCBI
B4GALT5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12047,042,479 - 47,123,209 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2047,041,469 - 47,123,214 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02045,977,801 - 46,058,429 (-)NCBIMhudiblu_PPA_v0panPan3
B4GALT5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12436,220,973 - 36,241,482 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2436,221,189 - 36,300,804 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2435,462,952 - 35,538,860 (-)NCBI
ROS_Cfam_1.02436,925,343 - 37,001,298 (-)NCBI
UMICH_Zoey_3.12436,166,534 - 36,242,395 (-)NCBI
UNSW_CanFamBas_1.02436,303,207 - 36,376,262 (-)NCBI
UU_Cfam_GSD_1.02436,842,820 - 36,918,775 (-)NCBI
B4galt5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640189,221,713 - 189,282,986 (+)NCBI
SpeTri2.0NW_0049365144,719,198 - 4,736,638 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B4GALT5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1751,259,786 - 51,356,803 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11751,257,273 - 51,334,566 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21757,578,640 - 57,655,502 (-)NCBISscrofa10.2Sscrofa10.2susScr3
B4GALT5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1214,270,945 - 14,357,052 (+)NCBI
ChlSab1.1 Ensembl214,271,141 - 14,354,159 (+)Ensembl
Vero_WHO_p1.0NW_02366605062,756,661 - 62,840,309 (+)NCBI
B4galt5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247905,770,586 - 5,792,036 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000009192   ⟹   ENSCLAP00000009063
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554458,534,220 - 8,559,672 (+)Ensembl
RefSeq Acc Id: XM_005392328   ⟹   XP_005392385
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554458,471,684 - 8,559,672 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013518294   ⟹   XP_013373748
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554458,471,696 - 8,559,672 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013518295   ⟹   XP_013373749
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554458,471,695 - 8,559,672 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005392385 (Get FASTA)   NCBI Sequence Viewer  
  XP_013373748 (Get FASTA)   NCBI Sequence Viewer  
  XP_013373749 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005392385   ⟸   XM_005392328
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013373749   ⟸   XM_013518295
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013373748   ⟸   XM_013518294
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000009063   ⟸   ENSCLAT00000009192


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006323 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000009063 ENTREZGENE
Ensembl Transcript ENSCLAT00000009192 ENTREZGENE
NCBI Gene B4galt5 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 B4galt5  beta-1,4-galactosyltransferase 5    UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5  Symbol and/or name change 5135510 APPROVED