Tspan32 (tetraspanin 32) - Rat Genome Database

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Gene: Tspan32 (tetraspanin 32) Chinchilla lanigera
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Symbol: Tspan32
Name: tetraspanin 32
RGD ID: 8893738
Description: INVOLVED IN blood coagulation (ortholog); cytoskeleton organization (ortholog); defense response to protozoan (ortholog); ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); delta beta-thalassemia (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN cell surface (ortholog); integrin alphaIIb-beta3 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tetraspanin-32
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542214,101,833 - 14,116,101 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542214,101,833 - 14,121,784 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Tspan32
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542214,101,833 - 14,116,101 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542214,101,833 - 14,121,784 (+)NCBIChiLan1.0ChiLan1.0
TSPAN32
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38112,302,013 - 2,318,204 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl112,301,997 - 2,318,204 (+)EnsemblGRCh38hg38GRCh38
GRCh37112,323,243 - 2,339,434 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36112,279,819 - 2,296,006 (+)NCBINCBI36Build 36hg18NCBI36
Build 34112,280,513 - 2,296,006NCBI
Celera112,358,117 - 2,374,304 (+)NCBICelera
Cytogenetic Map11p15.5NCBI
HuRef112,113,424 - 2,129,497 (+)NCBIHuRef
CHM1_1112,322,190 - 2,338,368 (+)NCBICHM1_1
T2T-CHM13v2.0112,391,457 - 2,407,521 (+)NCBIT2T-CHM13v2.0
Tspan32
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397142,558,644 - 142,573,223 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7142,558,783 - 142,573,381 (+)EnsemblGRCm39 Ensembl
GRCm387143,004,907 - 143,019,486 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7143,005,046 - 143,019,644 (+)EnsemblGRCm38mm10GRCm38
MGSCv377150,190,951 - 150,205,391 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367142,815,081 - 142,829,034 (+)NCBIMGSCv36mm8
Celera7142,760,651 - 142,775,091 (+)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.09NCBI
Tspan32
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81207,619,566 - 207,633,885 (+)NCBIGRCr8
mRatBN7.21198,190,128 - 198,204,447 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1198,190,164 - 198,204,445 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01216,189,535 - 216,206,202 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,191,886 - 216,206,200 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01223,053,403 - 223,067,728 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41203,281,261 - 203,295,227 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11203,434,747 - 203,448,969 (+)NCBI
Celera1195,756,899 - 195,773,648 (+)NCBICelera
Cytogenetic Map1q41NCBI
TSPAN32
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v294,725,715 - 4,742,015 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1113,937,515 - 3,953,633 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0112,339,941 - 2,357,049 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1112,367,674 - 2,384,209 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl112,367,674 - 2,384,209 (+)Ensemblpanpan1.1panPan2
TSPAN32
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11846,422,499 - 46,438,512 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1846,422,259 - 46,437,272 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1845,032,203 - 45,047,011 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01847,102,105 - 47,116,919 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1847,102,122 - 47,118,201 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11846,550,136 - 46,564,918 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01846,130,586 - 46,145,391 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01846,877,391 - 46,892,196 (+)NCBIUU_Cfam_GSD_1.0
Tspan32
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049472,672,142 - 2,686,673 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936794615,540 - 629,394 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936794615,540 - 629,394 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSPAN32
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl21,584,842 - 1,602,888 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.121,584,486 - 1,599,411 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TSPAN32
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112,110,218 - 2,125,839 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12,110,467 - 2,125,616 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603899,312,474 - 99,327,357 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tspan32
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476715,143,732 - 15,157,206 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476715,107,448 - 15,160,379 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000024195   ⟹   ENSCLAP00000023967
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542214,101,833 - 14,116,101 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000024196   ⟹   ENSCLAP00000023968
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542214,102,618 - 14,115,944 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000024197   ⟹   ENSCLAP00000023969
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542214,102,618 - 14,115,944 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000024198   ⟹   ENSCLAP00000023970
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542214,102,618 - 14,115,944 (+)Ensembl
RefSeq Acc Id: XM_005384201   ⟹   XP_005384258
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542214,101,833 - 14,116,101 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005384202   ⟹   XP_005384259
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542214,101,833 - 14,121,784 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005384258 (Get FASTA)   NCBI Sequence Viewer  
  XP_005384259 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000023967
  ENSCLAP00000023967.1
  ENSCLAP00000023968.1
  ENSCLAP00000023969.1
  ENSCLAP00000023970.1
RefSeq Acc Id: XP_005384259   ⟸   XM_005384202
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005384258   ⟸   XM_005384201
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W6P8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000023968   ⟸   ENSCLAT00000024196
Ensembl Acc Id: ENSCLAP00000023969   ⟸   ENSCLAT00000024197
Ensembl Acc Id: ENSCLAP00000023967   ⟸   ENSCLAT00000024195
Ensembl Acc Id: ENSCLAP00000023970   ⟸   ENSCLAT00000024198


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016450 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024195 ENTREZGENE
  ENSCLAT00000024195.1 UniProtKB/TrEMBL
  ENSCLAT00000024196.1 UniProtKB/TrEMBL
  ENSCLAT00000024197.1 UniProtKB/TrEMBL
  ENSCLAT00000024198.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1450.10 UniProtKB/TrEMBL
InterPro PHEMX_LEL UniProtKB/TrEMBL
  Tetraspanin/Peripherin UniProtKB/TrEMBL
  Tetraspanin_animals UniProtKB/TrEMBL
  Tetraspanin_EC2_sf UniProtKB/TrEMBL
NCBI Gene Tspan32 ENTREZGENE
Pfam Tetraspanin UniProtKB/TrEMBL
PIRSF Tetraspanin UniProtKB/TrEMBL
Superfamily-SCOP SSF48652 UniProtKB/TrEMBL
UniProt A0A8C2W1V7_CHILA UniProtKB/TrEMBL
  A0A8C2W1Y3_CHILA UniProtKB/TrEMBL
  A0A8C2W2G1_CHILA UniProtKB/TrEMBL
  A0A8C2W6P8 ENTREZGENE, UniProtKB/TrEMBL