Agpat2 (1-acylglycerol-3-phosphate O-acyltransferase 2) - Rat Genome Database

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Gene: Agpat2 (1-acylglycerol-3-phosphate O-acyltransferase 2) Chinchilla lanigera
Analyze
Symbol: Agpat2
Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
RGD ID: 8892606
Description: ENCODES a protein that exhibits 1-acylglycerol-3-phosphate O-acyltransferase activity (ortholog); INVOLVED IN epidermis development (ortholog); phosphatidic acid biosynthetic process (ortholog); positive regulation of cytokine production (ortholog); ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 1-acyl-sn-glycerol-3-phosphate acyltransferase beta
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555134,135,460 - 4,149,677 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555134,142,074 - 4,145,097 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Agpat2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555134,135,460 - 4,149,677 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555134,142,074 - 4,145,097 (+)NCBIChiLan1.0ChiLan1.0
AGPAT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389136,673,143 - 136,687,457 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9136,673,143 - 136,687,457 (-)EnsemblGRCh38hg38GRCh38
GRCh379139,567,595 - 139,581,909 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369138,687,416 - 138,701,732 (-)NCBINCBI36Build 36hg18NCBI36
Build 349136,843,432 - 136,857,712NCBI
Celera9110,081,330 - 110,095,564 (-)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,027,535 - 109,041,933 (-)NCBIHuRef
CHM1_19139,716,530 - 139,730,723 (-)NCBICHM1_1
T2T-CHM13v2.09148,906,123 - 148,920,642 (-)NCBIT2T-CHM13v2.0
Agpat2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,483,069 - 26,494,429 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,483,069 - 26,494,429 (-)EnsemblGRCm39 Ensembl
GRCm38226,593,057 - 26,604,417 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,593,057 - 26,604,417 (-)EnsemblGRCm38mm10GRCm38
MGSCv37226,449,107 - 26,459,730 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36226,415,596 - 26,426,219 (-)NCBIMGSCv36mm8
Celera226,310,673 - 26,321,538 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map218.96NCBI
Agpat2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8329,814,924 - 29,826,569 (-)NCBIGRCr8
mRatBN7.239,416,837 - 9,428,567 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl39,416,843 - 9,428,371 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx312,481,959 - 12,492,601 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0321,065,209 - 21,075,851 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0319,320,532 - 19,331,176 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.034,044,741 - 4,055,384 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl34,044,542 - 4,055,806 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.039,404,488 - 9,415,618 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.434,769,863 - 4,781,045 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.134,769,881 - 4,809,158 (-)NCBI
Celera34,236,651 - 4,247,224 (-)NCBICelera
Cytogenetic Map3p13NCBI
AGPAT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,696,619 - 2,710,862 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan192,699,026 - 2,713,196 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09107,749,195 - 107,763,033 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19136,722,914 - 136,737,286 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9136,722,914 - 136,737,286 (-)Ensemblpanpan1.1panPan2
AGPAT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,864,300 - 48,877,627 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,864,376 - 48,877,620 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha948,116,305 - 48,129,246 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,742,050 - 49,754,989 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,742,045 - 49,754,983 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1948,523,198 - 48,536,132 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,816,797 - 48,829,729 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,864,276 - 48,877,219 (+)NCBIUU_Cfam_GSD_1.0
Agpat2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,176,086 - 202,203,966 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366691,195,365 - 1,202,042 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366691,185,204 - 1,198,972 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGPAT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21313,736,965 - 313,740,537 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AGPAT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,511,063 - 1,525,146 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl121,511,124 - 1,525,440 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660583,743,355 - 3,757,442 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Agpat2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247601,747,081 - 1,755,113 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247601,746,642 - 1,755,154 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000010792   ⟹   ENSCLAP00000010660
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555134,135,460 - 4,149,677 (+)Ensembl
RefSeq Acc Id: XM_013506701   ⟹   XP_013362155
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555134,142,074 - 4,145,097 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013362155 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010660
  ENSCLAP00000010660.1
RefSeq Acc Id: XP_013362155   ⟸   XM_013506701
- UniProtKB: A0A8C2V6Z7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000010660   ⟸   ENSCLAT00000010792

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007355 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010792 ENTREZGENE
  ENSCLAT00000010792.1 UniProtKB/TrEMBL
InterPro AGP_acyltrans UniProtKB/TrEMBL
  Plipid/glycerol_acylTrfase UniProtKB/TrEMBL
NCBI Gene Agpat2 ENTREZGENE
PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE UniProtKB/TrEMBL
  1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE BETA UniProtKB/TrEMBL
Pfam Acyltransferase UniProtKB/TrEMBL
SMART PlsC UniProtKB/TrEMBL
Superfamily-SCOP Glycerol-3-phosphate (1)-acyltransferase UniProtKB/TrEMBL
UniProt A0A8C2V6Z7 ENTREZGENE, UniProtKB/TrEMBL