Brinp2 (BMP/retinoic acid inducible neural specific 2) - Rat Genome Database

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Gene: Brinp2 (BMP/retinoic acid inducible neural specific 2) Chinchilla lanigera
Analyze
Symbol: Brinp2
Name: BMP/retinoic acid inducible neural specific 2
RGD ID: 8892272
Description: INVOLVED IN cellular response to retinoic acid (ortholog); central nervous system neuron differentiation (ortholog); locomotion (ortholog); ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); gastrointestinal stromal tumor (ortholog); oral squamous cell carcinoma (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BMP/retinoic acid-inducible neural-specific protein 2; bone morphogenetic protein/retinoic acid inducible neural-specific 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540616,748,824 - 16,844,093 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540616,748,824 - 16,840,924 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Brinp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540616,748,824 - 16,844,093 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540616,748,824 - 16,840,924 (+)NCBIChiLan1.0ChiLan1.0
BRINP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381177,170,958 - 177,282,422 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1177,170,958 - 177,282,422 (+)EnsemblGRCh38hg38GRCh38
GRCh371177,140,094 - 177,251,558 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361175,407,256 - 175,518,181 (+)NCBINCBI36Build 36hg18NCBI36
Celera1150,250,704 - 150,361,628 (+)NCBICelera
Cytogenetic Map1q25.2NCBI
HuRef1148,367,642 - 148,478,577 (+)NCBIHuRef
CHM1_11178,564,624 - 178,675,569 (+)NCBICHM1_1
T2T-CHM13v2.01176,525,633 - 176,637,111 (+)NCBIT2T-CHM13v2.0
Brinp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391158,072,835 - 158,185,096 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1158,072,839 - 158,183,896 (-)EnsemblGRCm39 Ensembl
GRCm381158,245,265 - 158,356,528 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,245,269 - 158,356,326 (-)EnsemblGRCm38mm10GRCm38
MGSCv371160,175,400 - 160,286,391 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361160,081,948 - 160,193,003 (-)NCBIMGSCv36mm8
Celera1160,640,225 - 160,749,398 (-)NCBICelera
Cytogenetic Map1H1NCBI
cM Map168.27NCBI
Brinp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81372,964,498 - 73,065,312 (-)NCBIGRCr8
mRatBN7.21370,431,006 - 70,532,766 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1370,431,010 - 70,531,810 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1373,009,747 - 73,110,601 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01374,307,588 - 74,408,329 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01371,567,679 - 71,668,362 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01375,948,679 - 76,049,363 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1375,948,679 - 76,049,363 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01380,863,780 - 80,964,493 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41373,541,992 - 73,644,517 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11373,556,179 - 73,658,705 (-)NCBI
Celera1370,246,465 - 70,347,212 (-)NCBICelera
Cytogenetic Map13q22NCBI
BRINP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2172,437,118 - 72,547,910 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1172,107,317 - 72,218,106 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01152,694,667 - 152,806,085 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11156,391,436 - 156,502,742 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1156,450,411 - 156,502,742 (+)Ensemblpanpan1.1panPan2
BRINP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1722,332,465 - 22,449,295 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl722,339,056 - 22,448,854 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha721,865,088 - 21,973,700 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0722,086,726 - 22,195,881 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl722,072,721 - 22,195,861 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1721,992,092 - 22,101,532 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0722,092,409 - 22,201,467 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0722,235,542 - 22,344,318 (-)NCBIUU_Cfam_GSD_1.0
Brinp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934493,512,083 - 93,615,246 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648111,356,608 - 11,455,125 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648111,358,832 - 11,455,104 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BRINP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9118,975,719 - 119,095,336 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19118,967,670 - 119,095,345 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29130,733,801 - 130,820,039 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BRINP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12551,993,095 - 52,114,569 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2551,993,135 - 52,105,212 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605553,564,202 - 53,676,022 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Brinp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247714,924,750 - 4,972,097 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247714,926,187 - 5,021,454 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000017016   ⟹   ENSCLAP00000016851
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540616,748,824 - 16,844,093 (+)Ensembl
RefSeq Acc Id: XM_005374909   ⟹   XP_005374966
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540616,748,824 - 16,840,924 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374966 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016851
  ENSCLAP00000016851.1
RefSeq Acc Id: XP_005374966   ⟸   XM_005374909
- UniProtKB: A0A8C2VK30 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000016851   ⟸   ENSCLAT00000017016
Protein Domains
MACPF


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011561 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017016 ENTREZGENE
  ENSCLAT00000017016.1 UniProtKB/TrEMBL
InterPro BRINP UniProtKB/TrEMBL
  MACPF UniProtKB/TrEMBL
NCBI Gene Brinp2 ENTREZGENE
PANTHER BMP/RETINOIC ACID-INDUCIBLE NEURAL-SPECIFIC PROTEIN 2 UniProtKB/TrEMBL
  PTHR15564 UniProtKB/TrEMBL
Pfam BRINP UniProtKB/TrEMBL
  MACPF UniProtKB/TrEMBL
SMART MACPF UniProtKB/TrEMBL
UniProt A0A8C2VK30 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Brinp2  BMP/retinoic acid inducible neural specific 2    bone morphogenetic protein/retinoic acid inducible neural-specific 2  Symbol and/or name change 5135510 APPROVED