Rps9 (ribosomal protein S9) - Rat Genome Database

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Gene: Rps9 (ribosomal protein S9) Chinchilla lanigera
Analyze
Symbol: Rps9
Name: ribosomal protein S9
RGD ID: 8891427
Description: ENCODES a protein that exhibits 5.8S rRNA binding (ortholog); structural constituent of ribosome (ortholog); translation regulator activity (ortholog); INVOLVED IN positive regulation of cell population proliferation (ortholog); ribosomal small subunit biogenesis (ortholog); translation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH genetic disease (ortholog); Liver Failure (ortholog); FOUND IN cytoplasm (ortholog); cytosolic ribosome (ortholog); cytosolic small ribosomal subunit (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S9
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495560473,593 - 76,414 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495560473,593 - 76,414 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rps9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495560473,593 - 76,414 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495560473,593 - 76,414 (-)NCBIChiLan1.0ChiLan1.0
RPS9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381954,200,858 - 54,207,647 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1954,200,809 - 54,249,003 (+)EnsemblGRCh38hg38GRCh38
GRCh371954,704,726 - 54,711,515 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,396,538 - 59,403,327 (+)NCBINCBI36Build 36hg18NCBI36
Build 341959,396,830 - 59,403,323NCBI
Celera1951,746,402 - 51,753,191 (+)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1951,020,531 - 51,027,322 (+)NCBIHuRef
CHM1_11954,705,877 - 54,712,666 (+)NCBICHM1_1
T2T-CHM13v2.01957,281,246 - 57,288,035 (+)NCBIT2T-CHM13v2.0
Rps9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3973,707,035 - 3,709,896 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl73,706,992 - 3,709,896 (+)EnsemblGRCm39 Ensembl
GRCm3873,703,954 - 3,706,897 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl73,703,993 - 3,706,897 (+)EnsemblGRCm38mm10GRCm38
MGSCv3773,655,643 - 3,658,499 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3673,307,128 - 3,309,984 (+)NCBIMGSCv36mm8
Celera73,617,631 - 3,620,489 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.13NCBI
Rps9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,427,084 - 74,430,513 (-)NCBIGRCr8
mRatBN7.2165,511,723 - 65,515,076 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,511,723 - 65,515,123 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0164,018,325 - 64,021,723 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,018,125 - 64,090,021 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,010,583 - 63,013,972 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4163,824,657 - 63,828,046 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1163,901,399 - 63,904,417 (-)NCBI
Celera163,236,829 - 63,240,227 (-)NCBICelera
Cytogenetic Map1q12NCBI
RPS9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22060,204,984 - 60,212,219 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11962,126,323 - 62,133,553 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01951,132,900 - 51,139,713 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11959,974,377 - 59,981,236 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1959,974,377 - 59,981,236 (+)Ensemblpanpan1.1panPan2
RPS9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11102,989,338 - 102,995,755 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1102,989,360 - 103,098,573 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1103,051,249 - 103,057,599 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,634,684 - 103,640,864 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1103,634,715 - 103,640,864 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11103,277,288 - 103,283,423 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,033,101 - 103,039,442 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,747,981 - 103,754,162 (+)NCBIUU_Cfam_GSD_1.0
Rps9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,628,946 - 2,633,256 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936994304,094 - 308,893 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936994304,617 - 308,855 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl655,920,934 - 55,927,280 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1655,920,930 - 55,927,280 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,292,175 - 53,298,312 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1646,865,339 - 46,882,947 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607326,965,181 - 26,972,287 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,389,974 - 2,394,196 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,391,268 - 2,394,317 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000000660   ⟹   ENSCLAP00000000627
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495560473,593 - 76,414 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000000661   ⟹   ENSCLAP00000000628
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495560473,824 - 76,011 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000000662   ⟹   ENSCLAP00000000629
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495560474,303 - 76,011 (-)Ensembl
RefSeq Acc Id: XM_005414849   ⟹   XP_005414906
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495560473,593 - 76,414 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005414906 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000000627
  ENSCLAP00000000627.1
  ENSCLAP00000000628.1
  ENSCLAP00000000629.1
Reference Protein Sequences
RefSeq Acc Id: XP_005414906   ⟸   XM_005414849
- UniProtKB: A0A8C2UMF9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000000629   ⟸   ENSCLAT00000000662
RefSeq Acc Id: ENSCLAP00000000627   ⟸   ENSCLAT00000000660
RefSeq Acc Id: ENSCLAP00000000628   ⟸   ENSCLAT00000000661
Protein Domains
RNA-binding S4   Small ribosomal subunit protein uS4 N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000504 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000000660 ENTREZGENE
  ENSCLAT00000000660.1 UniProtKB/TrEMBL
  ENSCLAT00000000661.1 UniProtKB/TrEMBL
  ENSCLAT00000000662.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.290.10 UniProtKB/TrEMBL
InterPro Ribosomal_S4/S9 UniProtKB/TrEMBL
  Ribosomal_S4/S9_euk/arc UniProtKB/TrEMBL
  Ribosomal_S4/S9_N UniProtKB/TrEMBL
  Ribosomal_S4_CS UniProtKB/TrEMBL
  S4_RNA-bd UniProtKB/TrEMBL
  S4_RNA-bd_sf UniProtKB/TrEMBL
NCBI Gene Rps9 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S9 UniProtKB/TrEMBL
  PTHR11831 UniProtKB/TrEMBL
Pfam PF01479 UniProtKB/TrEMBL
  Ribosomal_S4 UniProtKB/TrEMBL
PROSITE PS50889 UniProtKB/TrEMBL
  RIBOSOMAL_S4 UniProtKB/TrEMBL
SMART Ribosomal_S4 UniProtKB/TrEMBL
  SM00363 UniProtKB/TrEMBL
Superfamily-SCOP Alpha-L RNA-binding motif UniProtKB/TrEMBL
UniProt A0A8C2UJH0_CHILA UniProtKB/TrEMBL
  A0A8C2ULF7_CHILA UniProtKB/TrEMBL
  A0A8C2UMF9 ENTREZGENE, UniProtKB/TrEMBL