Actn3 (actinin alpha 3) - Rat Genome Database

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Gene: Actn3 (actinin alpha 3) Chinchilla lanigera
Analyze
Symbol: Actn3
Name: actinin alpha 3
RGD ID: 8890366
Description: ENCODES a protein that exhibits actin filament binding (ortholog); identical protein binding (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN bone morphogenesis (ortholog); focal adhesion assembly (ortholog); muscle contraction (ortholog); ASSOCIATED WITH familial temporal lobe epilepsy 8 (ortholog); intellectual disability (ortholog); FOUND IN brush border (ortholog); focal adhesion (ortholog); sarcomere (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: actinin, alpha 3; alpha-actinin-3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542218,799,372 - 18,812,711 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542218,799,372 - 18,812,458 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
brush border  (ISO)
focal adhesion  (ISO)
sarcomere  (ISO)
Z disc  (ISO)

Molecular Function

References


Genomics

Comparative Map Data
Actn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542218,799,372 - 18,812,711 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542218,799,372 - 18,812,458 (-)NCBIChiLan1.0ChiLan1.0
ACTN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1166,546,395 - 66,563,334 (+)EnsemblGRCh38hg38GRCh38
GRCh381166,546,395 - 66,563,334 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371166,313,866 - 66,330,805 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361166,070,967 - 66,087,373 (+)NCBINCBI36hg18NCBI36
Build 341166,070,966 - 66,087,373NCBI
Celera1163,634,667 - 63,651,076 (+)NCBI
Cytogenetic Map11q13.2NCBI
HuRef1162,641,774 - 62,658,713 (+)NCBIHuRef
CHM1_11166,197,591 - 66,214,532 (+)NCBICHM1_1
Actn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39194,911,244 - 4,927,937 (-)NCBIGRCm39mm39
GRCm39 Ensembl194,911,244 - 4,927,937 (-)Ensembl
GRCm38194,861,216 - 4,877,909 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl194,861,216 - 4,877,909 (-)EnsemblGRCm38mm10GRCm38
MGSCv37194,861,223 - 4,877,884 (-)NCBIGRCm37mm9NCBIm37
MGSCv36194,861,223 - 4,877,884 (-)NCBImm8
Celera194,732,270 - 4,748,828 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.12NCBI
Actn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21202,159,081 - 202,175,012 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl1220,120,533 - 220,136,470 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01220,120,532 - 220,136,460 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01227,051,530 - 227,067,458 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,475,569 - 207,492,267 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11207,629,022 - 207,645,720 (-)NCBI
Celera1199,698,703 - 199,714,632 (-)NCBICelera
Cytogenetic Map1q43NCBI
ACTN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11165,229,043 - 65,245,429 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1165,228,713 - 65,245,429 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01161,905,722 - 61,922,227 (+)NCBIMhudiblu_PPA_v0panPan3
ACTN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11850,787,353 - 50,801,036 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1850,787,353 - 50,801,197 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,396,057 - 49,409,780 (-)NCBI
ROS_Cfam_1.01851,819,196 - 51,832,924 (-)NCBI
UMICH_Zoey_3.11850,920,215 - 50,933,937 (-)NCBI
UNSW_CanFamBas_1.01850,500,258 - 50,513,996 (-)NCBI
UU_Cfam_GSD_1.01851,290,188 - 51,303,909 (-)NCBI
Actn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,591,510 - 6,604,021 (-)NCBI
SpeTri2.0NW_0049365993,033,854 - 3,046,364 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACTN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl25,858,845 - 5,874,124 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.125,860,386 - 5,873,779 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.224,936,279 - 4,949,682 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACTN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,708,595 - 7,724,634 (-)NCBI
ChlSab1.1 Ensembl17,705,725 - 7,724,589 (-)Ensembl
Vero_WHO_p1.0NW_023666038104,992,438 - 105,008,258 (-)NCBI
Actn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476719,844,996 - 19,859,274 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000022296   ⟹   ENSCLAP00000022091
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542218,799,372 - 18,812,711 (-)Ensembl
RefSeq Acc Id: XM_005384391   ⟹   XP_005384448
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542218,799,372 - 18,812,458 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005384448 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005384448   ⟸   XM_005384391
- Sequence:
RefSeq Acc Id: ENSCLAP00000022091   ⟸   ENSCLAT00000022296


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015142 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000022091 ENTREZGENE
Ensembl Transcript ENSCLAT00000022296 ENTREZGENE
NCBI Gene Actn3 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Actn3  actinin alpha 3    actinin, alpha 3  Symbol and/or name change 5135510 APPROVED