Arhgap44 (Rho GTPase activating protein 44) - Rat Genome Database

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Gene: Arhgap44 (Rho GTPase activating protein 44) Chinchilla lanigera
Analyze
Symbol: Arhgap44
Name: Rho GTPase activating protein 44
RGD ID: 8890268
Description: ENCODES a protein that exhibits GTPase activator activity (ortholog); phospholipid binding (ortholog); small GTPase binding (ortholog); INVOLVED IN modification of dendritic spine (ortholog); modification of postsynaptic structure (ortholog); modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH acquired immunodeficiency syndrome (ortholog); chronic lymphocytic leukemia (ortholog); genetic disease (ortholog); FOUND IN dendrite (ortholog); dendritic spine (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: rho GTPase-activating protein 44
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554674,430,087 - 4,522,611 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554674,428,738 - 4,590,877 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Arhgap44
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554674,430,087 - 4,522,611 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554674,428,738 - 4,590,877 (-)NCBIChiLan1.0ChiLan1.0
ARHGAP44
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381712,789,498 - 12,991,643 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1712,789,498 - 12,991,643 (+)EnsemblGRCh38hg38GRCh38
GRCh371712,692,815 - 12,894,960 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361712,633,554 - 12,835,685 (+)NCBINCBI36Build 36hg18NCBI36
Celera1712,718,166 - 12,920,275 (+)NCBICelera
Cytogenetic Map17p12NCBI
HuRef1712,588,245 - 12,790,668 (+)NCBIHuRef
CHM1_11712,701,589 - 12,903,719 (+)NCBICHM1_1
T2T-CHM13v2.01712,696,985 - 12,899,110 (+)NCBIT2T-CHM13v2.0
Arhgap44
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391164,892,865 - 65,053,779 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1164,892,865 - 65,053,787 (-)EnsemblGRCm39 Ensembl
GRCm381165,002,039 - 65,162,972 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1165,002,039 - 65,162,961 (-)EnsemblGRCm38mm10GRCm38
MGSCv371164,815,541 - 64,976,463 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361164,818,234 - 64,979,156 (-)NCBIMGSCv36mm8
Celera1171,938,015 - 72,099,074 (-)NCBICelera
Cytogenetic Map11B3NCBI
cM Map1140.42NCBI
Arhgap44
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81050,154,724 - 50,322,027 (-)NCBIGRCr8
mRatBN7.21049,655,583 - 49,822,876 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1049,655,584 - 49,824,297 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01051,501,547 - 51,669,546 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1051,502,894 - 51,669,297 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01051,259,533 - 51,425,933 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41051,313,035 - 51,479,556 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11051,328,436 - 51,494,957 (-)NCBI
Celera1048,871,532 - 49,038,827 (-)NCBICelera
Cytogenetic Map10q24NCBI
ARHGAP44
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21960,757,445 - 60,959,269 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11765,564,061 - 65,765,878 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01738,657,824 - 38,859,591 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11743,357,438 - 43,558,355 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1743,357,438 - 43,453,457 (-)Ensemblpanpan1.1panPan2
ARHGAP44
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1536,790,059 - 36,957,932 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl536,789,814 - 36,957,411 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha536,933,812 - 37,101,416 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0536,898,675 - 37,066,421 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl536,898,649 - 37,066,421 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1536,871,586 - 37,039,378 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0536,818,449 - 36,986,578 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0537,008,878 - 37,176,525 (+)NCBIUU_Cfam_GSD_1.0
Arhgap44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560251,899,406 - 52,068,726 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365955,373,476 - 5,543,073 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365955,373,645 - 5,542,915 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARHGAP44
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1257,049,895 - 57,206,889 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11257,049,900 - 57,206,706 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21260,167,786 - 60,195,211 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARHGAP44
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11612,125,543 - 12,328,203 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1612,125,574 - 12,330,501 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660598,910,762 - 9,113,230 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arhgap44
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624877661,998 - 850,431 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624877662,595 - 851,762 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000015725   ⟹   ENSCLAP00000015563
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554674,430,087 - 4,522,611 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000015726   ⟹   ENSCLAP00000015564
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554674,432,555 - 4,522,611 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000015727   ⟹   ENSCLAP00000015565
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554674,493,865 - 4,522,611 (-)Ensembl
RefSeq Acc Id: XM_005399741   ⟹   XP_005399798
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554674,428,738 - 4,590,877 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005399798 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015563
  ENSCLAP00000015563.1
  ENSCLAP00000015564.1
  ENSCLAP00000015565.1
Reference Protein Sequences
RefSeq Acc Id: XP_005399798   ⟸   XM_005399741
- UniProtKB: A0A8C2VH77 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000015564   ⟸   ENSCLAT00000015726
RefSeq Acc Id: ENSCLAP00000015563   ⟸   ENSCLAT00000015725
RefSeq Acc Id: ENSCLAP00000015565   ⟸   ENSCLAT00000015727
Protein Domains
BAR   Rho-GAP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010698 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015725 ENTREZGENE
  ENSCLAT00000015725.1 UniProtKB/TrEMBL
  ENSCLAT00000015726.1 UniProtKB/TrEMBL
  ENSCLAT00000015727.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.555.10 UniProtKB/TrEMBL
  1.20.1270.60 UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/TrEMBL
  BAR_dom UniProtKB/TrEMBL
  RHG17/44/SH3BP1-like UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  RhoGAP_dom UniProtKB/TrEMBL
NCBI Gene Arhgap44 ENTREZGENE
PANTHER 3BP-1 RELATED RHOGAP UniProtKB/TrEMBL
  RHO GTPASE-ACTIVATING PROTEIN 44 UniProtKB/TrEMBL
Pfam BAR UniProtKB/TrEMBL
  RhoGAP UniProtKB/TrEMBL
PROSITE BAR UniProtKB/TrEMBL
  RHOGAP UniProtKB/TrEMBL
SMART BAR UniProtKB/TrEMBL
  RhoGAP UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/TrEMBL
  SSF48350 UniProtKB/TrEMBL
UniProt A0A8C2VH40_CHILA UniProtKB/TrEMBL
  A0A8C2VH77 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YQD3_CHILA UniProtKB/TrEMBL