LOC102018114 (T-cell receptor-associated transmembrane adapter 1) - Rat Genome Database

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Gene: LOC102018114 (T-cell receptor-associated transmembrane adapter 1) Chinchilla lanigera
Analyze
Symbol: LOC102018114 (Ensembl: TRAT1)
Name: T-cell receptor-associated transmembrane adapter 1
RGD ID: 8889115
Description: INVOLVED IN negative regulation of receptor recycling (ortholog); negative regulation of transport (ortholog); positive regulation of calcium-mediated signaling (ortholog); ASSOCIATED WITH genetic disease (ortholog); megacolon (ortholog); FOUND IN centriolar satellite (ortholog); mitotic spindle (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein LOC102018114
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554279,665,456 - 9,699,788 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554279,665,479 - 9,700,305 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
LOC102018114
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554279,665,456 - 9,699,788 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554279,665,479 - 9,700,305 (+)NCBIChiLan1.0ChiLan1.0
TRAT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383108,822,786 - 108,855,005 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3108,822,770 - 108,855,005 (+)EnsemblGRCh38hg38GRCh38
GRCh373108,541,633 - 108,573,852 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363110,024,321 - 110,056,404 (+)NCBINCBI36Build 36hg18NCBI36
Build 343110,024,320 - 110,056,404NCBI
Celera3106,939,375 - 106,971,458 (+)NCBICelera
Cytogenetic Map3q13.13NCBI
HuRef3105,915,273 - 105,947,371 (+)NCBIHuRef
CHM1_13108,505,620 - 108,537,674 (+)NCBICHM1_1
T2T-CHM13v2.03111,543,021 - 111,575,233 (+)NCBIT2T-CHM13v2.0
Trat1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391648,551,137 - 48,630,883 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1648,551,137 - 48,592,384 (-)EnsemblGRCm39 Ensembl
GRCm381648,730,774 - 48,810,547 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1648,730,774 - 48,772,021 (-)EnsemblGRCm38mm10GRCm38
MGSCv371648,734,803 - 48,772,069 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361648,651,536 - 48,691,761 (-)NCBIMGSCv36mm8
Celera1649,095,445 - 49,132,938 (-)NCBICelera
Cytogenetic Map16B5NCBI
cM Map1630.75NCBI
Trat1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,498,742 - 65,540,823 (+)NCBIGRCr8
mRatBN7.21152,035,750 - 52,077,805 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1152,035,750 - 52,077,805 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1160,798,860 - 60,840,951 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01153,460,643 - 53,502,744 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01152,565,480 - 52,607,541 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01154,619,169 - 54,661,284 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1154,619,129 - 54,662,353 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01157,780,653 - 57,820,982 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41153,279,300 - 53,321,892 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1151,634,708 - 51,676,239 (+)NCBICelera
Cytogenetic Map11q21NCBI
LOC100990994
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22106,800,505 - 106,833,301 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13106,805,284 - 106,838,080 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03105,948,998 - 105,981,111 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13112,879,399 - 112,911,668 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3112,879,355 - 112,911,668 (+)Ensemblpanpan1.1panPan2
TRAT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13314,033,597 - 14,068,309 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3314,033,657 - 14,067,974 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3314,139,060 - 14,175,773 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03314,199,408 - 14,237,150 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3314,199,468 - 14,235,554 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13314,068,627 - 14,103,302 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03314,135,794 - 14,173,516 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03314,547,404 - 14,584,144 (+)NCBIUU_Cfam_GSD_1.0
LOC101972231
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602140,353,838 - 140,386,098 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366452,464,548 - 2,491,016 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366452,459,524 - 2,491,016 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13150,629,944 - 150,666,598 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113150,629,942 - 150,666,842 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213159,760,124 - 159,796,220 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103228361
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12271,939,447 - 71,972,187 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2271,939,207 - 71,972,172 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604194,493,792 - 94,526,013 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101706523
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473140,280,884 - 40,306,653 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473140,281,086 - 40,319,254 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000016047   ⟹   ENSCLAP00000015883
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554279,665,456 - 9,699,788 (+)Ensembl
RefSeq Acc Id: XM_005386363   ⟹   XP_005386420
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554279,665,479 - 9,700,305 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515031   ⟹   XP_013370485
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554279,665,479 - 9,700,305 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013515032   ⟹   XP_013370486
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554279,665,479 - 9,700,305 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005386420 (Get FASTA)   NCBI Sequence Viewer  
  XP_013370485 (Get FASTA)   NCBI Sequence Viewer  
  XP_013370486 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015883
  ENSCLAP00000015883.1
Reference Protein Sequences
RefSeq Acc Id: XP_005386420   ⟸   XM_005386363
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VLY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013370485   ⟸   XM_013515031
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013370486   ⟸   XM_013515032
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000015883   ⟸   ENSCLAT00000016047


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010923 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016047 ENTREZGENE
  ENSCLAT00000016047.1 UniProtKB/TrEMBL
InterPro T-cell_rcpt-assoc_TM_adapter-1 UniProtKB/TrEMBL
NCBI Gene LOC102018114 ENTREZGENE
PANTHER PTHR15951 UniProtKB/TrEMBL
  T-CELL RECEPTOR-ASSOCIATED TRANSMEMBRANE ADAPTER 1 UniProtKB/TrEMBL
Pfam SIT UniProtKB/TrEMBL
UniProt A0A8C2VLY0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 LOC102018114  T-cell receptor-associated transmembrane adapter 1    T-cell receptor-associated transmembrane adapter 1-like  Symbol and/or name change 5135510 APPROVED