Mtmr6 (myotubularin related protein 6) - Rat Genome Database

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Gene: Mtmr6 (myotubularin related protein 6) Chinchilla lanigera
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Symbol: Mtmr6
Name: myotubularin related protein 6
RGD ID: 8887418
Description: ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate phosphatase activity (ortholog); phosphatidylinositol-3-phosphatase activity (ortholog); INVOLVED IN phosphatidylinositol dephosphorylation (ortholog); FOUND IN cytoplasm (ortholog); nuclear envelope (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myotubularin-related protein 6
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554974,715,236 - 4,757,181 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554974,715,236 - 4,757,182 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Mtmr6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554974,715,236 - 4,757,181 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554974,715,236 - 4,757,182 (-)NCBIChiLan1.0ChiLan1.0
MTMR6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381325,246,222 - 25,287,488 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1325,246,222 - 25,287,488 (-)EnsemblGRCh38hg38GRCh38
GRCh371325,820,360 - 25,861,626 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361324,718,339 - 24,759,704 (-)NCBINCBI36hg18NCBI36
Build 341324,719,371 - 24,759,704NCBI
Celera136,884,597 - 6,925,963 (-)NCBI
Cytogenetic Map13q12.13NCBI
HuRef136,634,667 - 6,676,112 (-)NCBIHuRef
CHM1_11325,788,581 - 25,829,935 (-)NCBICHM1_1
T2T-CHM13v2.01324,455,889 - 24,497,172 (-)NCBI
Mtmr6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391460,488,923 - 60,502,057 (+)NCBIGRCm39mm39
GRCm391460,502,576 - 60,539,820 (+)NCBIGRCm39mm39
GRCm39 Ensembl1460,502,677 - 60,539,819 (+)Ensembl
GRCm381460,265,180 - 60,302,371 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1460,265,228 - 60,302,370 (+)EnsemblGRCm38mm10GRCm38
MGSCv371460,884,065 - 60,921,207 (+)NCBIGRCm37mm9NCBIm37
MGSCv361459,219,338 - 59,256,480 (+)NCBImm8
Celera1458,054,681 - 58,091,815 (+)NCBICelera
Cytogenetic Map14D1NCBI
Mtmr6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21534,419,868 - 34,457,863 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1534,419,903 - 34,457,861 (+)Ensembl
Rnor_6.01540,558,917 - 40,597,311 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1540,558,932 - 40,597,309 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01544,371,041 - 44,409,234 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41539,362,975 - 39,401,299 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11539,378,721 - 39,415,915 (+)NCBI
Celera1534,121,583 - 34,159,654 (+)NCBICelera
Cytogenetic Map15p12NCBI
MTMR6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11324,889,577 - 24,931,192 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1324,889,582 - 24,930,980 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0136,539,151 - 6,579,564 (-)NCBIMhudiblu_PPA_v0panPan3
MTMR6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12514,182,931 - 14,221,690 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2514,182,702 - 14,219,613 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2514,262,817 - 14,301,555 (+)NCBI
ROS_Cfam_1.02514,314,112 - 14,352,875 (+)NCBI
ROS_Cfam_1.0 Ensembl2514,314,141 - 14,409,529 (+)Ensembl
UMICH_Zoey_3.12514,196,063 - 14,234,802 (+)NCBI
UNSW_CanFamBas_1.02514,198,000 - 14,236,750 (+)NCBI
UU_Cfam_GSD_1.02514,246,944 - 14,285,712 (+)NCBI
Mtmr6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945116,420,880 - 116,455,391 (+)NCBI
SpeTri2.0NW_0049366881,033,153 - 1,067,709 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTMR6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl113,188,563 - 3,217,412 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1113,188,560 - 3,217,443 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2112,485,812 - 2,491,028 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MTMR6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.134,638,980 - 4,681,959 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl34,638,780 - 4,681,839 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605739,759,917 - 39,804,008 (+)NCBIVero_WHO_p1.0
Mtmr6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477613,237,075 - 13,282,214 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462477613,237,244 - 13,281,597 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000010934   ⟹   ENSCLAP00000010801
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554974,715,236 - 4,757,181 (-)Ensembl
RefSeq Acc Id: XM_005406329   ⟹   XP_005406386
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554974,715,236 - 4,757,182 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005406330   ⟹   XP_005406387
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554974,715,236 - 4,757,181 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005406386 (Get FASTA)   NCBI Sequence Viewer  
  XP_005406387 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005406387   ⟸   XM_005406330
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005406386   ⟸   XM_005406329
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000010801   ⟸   ENSCLAT00000010934
Protein Domains
Myotubularin phosphatase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007452 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000010801 ENTREZGENE
  ENSCLAP00000010801.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010934 ENTREZGENE
  ENSCLAT00000010934.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro MTMR6 UniProtKB/TrEMBL
  MTMR6_PH-GRAM UniProtKB/TrEMBL
  Myotubularin-like_Pase_dom UniProtKB/TrEMBL
  Myotubularin_fam UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
NCBI Gene Mtmr6 ENTREZGENE
PANTHER PTHR10807 UniProtKB/TrEMBL
  PTHR10807:SF34 UniProtKB/TrEMBL
Pfam Myotub-related UniProtKB/TrEMBL
PROSITE PPASE_MYOTUBULARIN UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
SMART PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/TrEMBL
UniProt A0A8C2YN35_CHILA UniProtKB/TrEMBL