Mtmr6 (myotubularin related protein 6) - Rat Genome Database

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Gene: Mtmr6 (myotubularin related protein 6) Chinchilla lanigera
Analyze
Symbol: Mtmr6
Name: myotubularin related protein 6
RGD ID: 8887418
Description: ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate phosphatase activity (ortholog); phosphatidylinositol-3-phosphate phosphatase activity (ortholog); INVOLVED IN phosphatidylinositol dephosphorylation (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (ortholog); nuclear envelope (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myotubularin-related protein 6
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554974,715,236 - 4,757,181 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554974,715,236 - 4,757,182 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mtmr6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554974,715,236 - 4,757,181 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554974,715,236 - 4,757,182 (-)NCBIChiLan1.0ChiLan1.0
MTMR6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381325,246,222 - 25,287,488 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1325,246,222 - 25,287,510 (-)EnsemblGRCh38hg38GRCh38
GRCh371325,820,360 - 25,861,626 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361324,718,339 - 24,759,704 (-)NCBINCBI36Build 36hg18NCBI36
Build 341324,719,371 - 24,759,704NCBI
Celera136,884,597 - 6,925,963 (-)NCBICelera
Cytogenetic Map13q12.13NCBI
HuRef136,634,667 - 6,676,112 (-)NCBIHuRef
CHM1_11325,788,581 - 25,829,935 (-)NCBICHM1_1
T2T-CHM13v2.01324,455,889 - 24,497,172 (-)NCBIT2T-CHM13v2.0
Mtmr6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391460,488,941 - 60,539,820 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1460,502,677 - 60,539,819 (+)EnsemblGRCm39 Ensembl
GRCm381460,265,180 - 60,302,371 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1460,265,228 - 60,302,370 (+)EnsemblGRCm38mm10GRCm38
MGSCv371460,884,065 - 60,921,207 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361459,219,338 - 59,256,480 (+)NCBIMGSCv36mm8
Celera1458,054,681 - 58,091,815 (+)NCBICelera
Cytogenetic Map14D1NCBI
Mtmr6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81538,596,091 - 38,634,023 (+)NCBIGRCr8
mRatBN7.21534,419,931 - 34,457,863 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1534,419,903 - 34,457,861 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1536,274,857 - 36,312,970 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01537,425,489 - 37,463,602 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01535,881,061 - 35,918,993 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01540,558,917 - 40,597,311 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1540,558,932 - 40,597,309 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01544,371,041 - 44,409,234 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41539,362,975 - 39,401,299 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11539,378,721 - 39,415,915 (+)NCBI
Celera1534,121,583 - 34,159,654 (+)NCBICelera
Cytogenetic Map15p12NCBI
MTMR6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21424,843,620 - 24,884,705 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11315,953,196 - 15,994,349 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0136,539,151 - 6,579,564 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11324,889,577 - 24,931,192 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1324,889,582 - 24,930,980 (-)Ensemblpanpan1.1panPan2
MTMR6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12514,182,931 - 14,221,690 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2514,182,702 - 14,219,613 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2514,262,817 - 14,301,555 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02514,314,112 - 14,352,875 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2514,314,141 - 14,409,529 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12514,196,063 - 14,234,802 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02514,198,000 - 14,236,750 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02514,246,944 - 14,285,712 (+)NCBIUU_Cfam_GSD_1.0
Mtmr6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945116,420,880 - 116,455,391 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366881,033,099 - 1,067,802 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366881,033,153 - 1,067,709 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTMR6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl113,188,563 - 3,217,412 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1113,188,560 - 3,217,443 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2112,485,812 - 2,491,028 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MTMR6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.134,638,980 - 4,681,959 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl34,638,780 - 4,681,839 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605739,759,917 - 39,804,008 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtmr6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477613,237,075 - 13,282,214 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477613,237,244 - 13,281,597 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000010934   ⟹   ENSCLAP00000010801
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554974,715,236 - 4,757,181 (-)Ensembl
RefSeq Acc Id: XM_005406329   ⟹   XP_005406386
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554974,715,236 - 4,757,182 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005406330   ⟹   XP_005406387
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554974,715,236 - 4,757,181 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005406386 (Get FASTA)   NCBI Sequence Viewer  
  XP_005406387 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010801
  ENSCLAP00000010801.1
Reference Protein Sequences
RefSeq Acc Id: XP_005406387   ⟸   XM_005406330
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YN35 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005406386   ⟸   XM_005406329
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000010801   ⟸   ENSCLAT00000010934
Protein Domains
Myotubularin phosphatase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007452 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010934 ENTREZGENE
  ENSCLAT00000010934.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro MTMR6_PH-GRAM UniProtKB/TrEMBL
  Myotubularin-like_Pase_dom UniProtKB/TrEMBL
  Myotubularin_fam UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
NCBI Gene Mtmr6 ENTREZGENE
PANTHER PTHR10807 UniProtKB/TrEMBL
  PTHR10807:SF34 UniProtKB/TrEMBL
Pfam Myotub-related UniProtKB/TrEMBL
  PH-GRAM_MTMR6-like UniProtKB/TrEMBL
PROSITE PPASE_MYOTUBULARIN UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
SMART PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF52799 UniProtKB/TrEMBL
UniProt A0A8C2YN35 ENTREZGENE, UniProtKB/TrEMBL