Slitrk5 (SLIT and NTRK like family member 5) - Rat Genome Database

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Gene: Slitrk5 (SLIT and NTRK like family member 5) Chinchilla lanigera
Analyze
Symbol: Slitrk5
Name: SLIT and NTRK like family member 5
RGD ID: 8886977
Description: INVOLVED IN adult behavior (ortholog); axonogenesis (ortholog); chemical synaptic transmission (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); obsessive-compulsive disorder (ortholog); FOUND IN postsynaptic density membrane (ortholog); receptor complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SLIT and NTRK-like family, member 5; SLIT and NTRK-like protein 5
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540421,342,379 - 21,350,464 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540421,342,379 - 21,350,803 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slitrk5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540421,342,379 - 21,350,464 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540421,342,379 - 21,350,803 (-)NCBIChiLan1.0ChiLan1.0
SLITRK5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381387,671,371 - 87,679,616 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1387,671,371 - 87,696,272 (+)EnsemblGRCh38hg38GRCh38
GRCh371388,323,626 - 88,331,871 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361387,122,871 - 87,129,872 (+)NCBINCBI36Build 36hg18NCBI36
Build 341387,122,870 - 87,129,869NCBI
Celera1369,166,179 - 69,173,176 (+)NCBICelera
Cytogenetic Map13q31.2NCBI
HuRef1368,910,931 - 68,917,930 (+)NCBIHuRef
CHM1_11388,293,198 - 88,300,203 (+)NCBICHM1_1
T2T-CHM13v2.01386,874,975 - 86,899,840 (+)NCBIT2T-CHM13v2.0
Slitrk5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914111,912,547 - 111,920,576 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14111,912,529 - 111,920,573 (+)EnsemblGRCm39 Ensembl
GRCm3814111,675,115 - 111,683,144 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14111,675,097 - 111,683,141 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714112,074,337 - 112,082,357 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614110,556,952 - 110,564,972 (+)NCBIMGSCv36mm8
Celera14110,285,183 - 110,293,077 (+)NCBICelera
Cytogenetic Map14E4NCBI
cM Map1457.86NCBI
Slitrk5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81595,261,397 - 95,270,465 (+)NCBIGRCr8
mRatBN7.21588,848,123 - 88,858,809 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1588,847,535 - 88,856,836 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1592,796,049 - 92,800,870 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01593,928,944 - 93,933,765 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01590,858,691 - 90,863,512 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01596,817,907 - 96,826,760 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1596,821,832 - 96,826,653 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015100,296,097 - 100,304,915 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41596,407,553 - 96,412,374 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11596,419,582 - 96,427,541 (+)NCBI
Celera1587,847,358 - 87,852,179 (+)NCBICelera
Cytogenetic Map15q23NCBI
SLITRK5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21489,167,647 - 89,175,189 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11387,763,651 - 87,771,201 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01368,810,639 - 68,831,189 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11387,979,061 - 87,985,133 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1387,980,905 - 87,983,781 (+)Ensemblpanpan1.1panPan2
SLITRK5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12239,381,201 - 39,390,728 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2239,384,666 - 39,387,542 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2239,212,232 - 39,221,692 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02239,757,760 - 39,767,235 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2239,757,875 - 39,766,340 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12239,427,942 - 39,437,403 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02239,508,055 - 39,517,498 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02239,505,957 - 39,515,412 (+)NCBIUU_Cfam_GSD_1.0
Slitrk5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945175,245,525 - 175,253,697 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647220,698,463 - 20,705,408 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647220,698,334 - 20,706,161 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLITRK5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1157,792,665 - 57,800,846 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11157,792,576 - 57,800,852 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21163,658,233 - 63,669,168 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLITRK5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1366,566,718 - 66,574,096 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl366,569,866 - 66,572,742 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604622,928,682 - 22,936,945 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slitrk5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247795,382,466 - 5,390,079 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247795,382,712 - 5,390,490 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000008708   ⟹   ENSCLAP00000008581
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540421,342,379 - 21,350,464 (-)Ensembl
RefSeq Acc Id: XM_005374119   ⟹   XP_005374176
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540421,342,379 - 21,350,803 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005374120   ⟹   XP_005374177
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540421,342,379 - 21,350,464 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374176 (Get FASTA)   NCBI Sequence Viewer  
  XP_005374177 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000008581
  ENSCLAP00000008581.1
Reference Protein Sequences
RefSeq Acc Id: XP_005374176   ⟸   XM_005374119
- UniProtKB: A0A8C2YM14 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005374177   ⟸   XM_005374120
- UniProtKB: A0A8C2YM14 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000008581   ⟸   ENSCLAT00000008708
Protein Domains
LRRCT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006000 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008708 ENTREZGENE
  ENSCLAT00000008708.1 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  Slitrk UniProtKB/TrEMBL
NCBI Gene Slitrk5 ENTREZGENE
PANTHER PTHR45773 UniProtKB/TrEMBL
  SLIT AND NTRK-LIKE PROTEIN 5 UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt A0A8C2YM14 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Slitrk5  SLIT and NTRK like family member 5    SLIT and NTRK-like family, member 5  Symbol and/or name change 5135510 APPROVED