Serinc2 (serine incorporator 2) - Rat Genome Database

Name: Serinc2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Serinc2 (serine incorporator 2) Chinchilla lanigera

Analyze

Symbol:

Serinc2

Name:

serine incorporator 2

RGD ID:

8886352

Description:

INVOLVED IN phosphatidylserine metabolic process (ortholog); positive regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity (ortholog); positive regulation of serine C-palmitoyltransferase activity (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

RGD Orthologs

Human

Mouse

Rat

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SERINC2 (serine incorporator 2)	NCBI	Ortholog
Mus musculus (house mouse):	Serinc2 (serine incorporator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Serinc2 (serine incorporator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SERINC2 (serine incorporator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SERINC2 (serine incorporator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Serinc2 (serine incorporator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SERINC2 (serine incorporator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SERINC2 (serine incorporator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Serinc2 (serine incorporator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	9,892,657 - 9,915,018 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	9,905,152 - 9,914,943 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

phosphatidylserine metabolic process (ISO)

positive regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity (ISO)

positive regulation of serine C-palmitoyltransferase activity (ISO)

References

References - curated


1.	Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data

Serinc2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	9,892,657 - 9,915,018 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	9,905,152 - 9,914,943 (+)	NCBI	ChiLan1.0	ChiLan1.0

SERINC2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	31,409,777 - 31,434,678 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	1	31,409,565 - 31,434,680 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	31,882,624 - 31,907,525 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	31,658,550 - 31,680,112 (+)	NCBI	NCBI36		hg18	NCBI36
Celera	1	30,143,213 - 30,168,046 (+)	NCBI
Cytogenetic Map	1	p35.2	NCBI
HuRef	1	29,989,453 - 30,017,892 (+)	NCBI		HuRef
CHM1_1	1	31,998,320 - 32,023,476 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	31,262,102 - 31,291,896 (+)	NCBI

Serinc2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	130,147,289 - 130,172,993 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	4	130,147,288 - 130,172,998 (-)	Ensembl
GRCm38	4	130,253,495 - 130,279,218 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	130,253,495 - 130,279,205 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	129,930,741 - 129,952,830 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	4	129,755,801 - 129,777,857 (-)	NCBI			mm8
Celera	4	128,586,340 - 128,608,383 (-)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI

Serinc2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	142,592,308 - 142,614,628 (-)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	5	142,592,309 - 142,618,364 (-)	Ensembl
Rnor_6.0	5	148,470,060 - 148,492,232 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	148,470,061 - 148,492,232 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	152,187,837 - 152,210,009 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	149,279,136 - 149,301,805 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	149,289,176 - 149,312,129 (-)	NCBI
Celera	5	141,059,502 - 141,081,693 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

SERINC2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	31,714,162 - 31,734,906 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	31,710,291 - 31,734,906 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	1	30,689,645 - 30,714,325 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

SERINC2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	69,600,349 - 69,618,004 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	69,600,360 - 69,620,946 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	66,179,079 - 66,196,727 (-)	NCBI
ROS_Cfam_1.0	2	70,164,791 - 70,182,451 (-)	NCBI
ROS_Cfam_1.0 Ensembl	2	70,164,797 - 70,185,345 (-)	Ensembl
UMICH_Zoey_3.1	2	67,000,805 - 67,018,460 (-)	NCBI
UNSW_CanFamBas_1.0	2	67,997,271 - 68,014,928 (-)	NCBI
UU_Cfam_GSD_1.0	2	68,996,787 - 69,014,444 (-)	NCBI

Serinc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	48,796,095 - 48,814,379 (+)	NCBI
SpeTri2.0	NW_004936474	14,622,980 - 14,639,159 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SERINC2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	87,992,987 - 88,017,130 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	87,992,933 - 88,017,141 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	81,673,720 - 81,680,123 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SERINC2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	101,401,526 - 101,423,852 (-)	NCBI	ChlSab1.1		chlSab2
ChlSab1.1 Ensembl	20	101,401,222 - 101,423,599 (-)	Ensembl	ChlSab1.1		chlSab2
Vero_WHO_p1.0	NW_023666033	15,255,491 - 15,289,647 (+)	NCBI	Vero_WHO_p1.0

Serinc2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	14,741,902 - 14,766,936 (+)	Ensembl	HetGla_female_1.0		hetGla2
HetGla 1.0	NW_004624764	14,744,347 - 14,763,423 (+)	NCBI	HetGla_female_1.0		hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013519725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01044263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01064457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDI01080614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSCLAT00000022012 ⟹ ENSCLAP00000021809

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955452	9,892,657 - 9,915,018 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000022013 ⟹ ENSCLAP00000021810

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955452	9,894,501 - 9,914,519 (+)	Ensembl

RefSeq Acc Id:

XM_013519725 ⟹ XP_013375179

RefSeq Status:

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955452	9,905,152 - 9,914,943 (+)	NCBI

Sequence:

show sequence

CGGGGCCGAGCCTGACACTCGGAGTCCGACGGCCCCGGATCCGCGACGCGCCCCGGCCCCGGCC
CCGGCCCCGCTCCGCCGCCATGGGCGCCTGCCTGGGCGCCTGCTCCCTGCTCAGCTGCGCCTCC
TGCCTCTGCGGCTCCGCGCCCTGCATCCTGTGCTCCTGCTGCCCCTCCAGCCGCAACTCCACCG
TGAGCCGCCTGCTCTTCACCGGCTTCCTCCTCCTGGGGGTGCTGGTGTCCATCATCATGCTGAG
CCCGGGCGTGGAGAGTCAGCTCCACAAGCTGCCCTGGGTGTGCGAGGGTGCCGAGACGCCCGGC
GTCCTGCAGGGCCACATCGACTGCGGCTCCCTGCTGGGCTTCCGCGCCGTCTACCGCATGTGCT
TCGCCACGGCCGCCTTCTTCTTCCTGTTTACCCTGCTCATGATCTGCGTGCGCAGCAGCCGGGA
CCCCCGGGCTGCGGTCCAGAACGGGTTTTGGTTCTTTAAGTTCCTGATCCTTGTGGGCATCACC
GTGGGTGCCTTCTACATCCCTGATGGCTCCTTCTCCAATATCTGGTTCTACTTCGGCGTCGTGG
GCTCCTTCCTCTTCATCCTCATCCAGCTGCTGCTGCTCATCGACTTCGCCCACTCCTGGAACCA
GCGGTGGCTGGGCAAGGCCGAGGAGTGCGGCTCCCGCTCCTGGTACGCAGGCCTCTTCTTCTTC
ACCCTGCTCTTCTACGCGCTGTCTATCGCGGCCGTGGCGCTGCTCTTCGTCTACTACACCCATC
CCGGCACCTGCCACGAGGGCAAGATCTTCATCAGCCTCAACCTTGTCTTCTGCTTGTGCGTCTC
CATCGTCGCCGTGTTGCCCAAGGTCCAGGAAGCCCAGCCCAACTCGGGTCTGCTGCAGGCCTCG
GTCGTCACACTGTACACCATGTTTGTCACCTGGTTGGCCCTGTCCAATGTCCCTGACCAGAAAT
GTAACCCGCACCTGCTGACCCAGCTCAGCAATGAGACGGTGCTGGCCGGCCCCGAGGGCTATGA
GACCCAGTGGTGGGATGCACCCAGCATTGTGGGGCTCGTCATCTTTATCCTGTGCACCCTCTTC
ATCAGTGTGCGCTCCTCCGACCACCGGCAGGTGAACAGCCTGATGCAGACCGAGGACTGCTCCA
TCGCGCTGGAGGCCACGCAGCAGCAGCAGCAGCAGCAGGTGGCCACCTCTGAGAACCGAGTTTT
TGACAACGAGCAGGATGGCGTCACCTATAGCTACTCCTTCTTCCACTTCTGCCTGGTGCTGGCC
TCCCTGCACATCATGATGACCCTCACCAACTGGTACAGACCCGGCGAGACGCACAAGATGATCA
GCACATGGACCGCTGTGTGGGTCAAGATCTGCGCCAGCTGGGCAGGACTGTTCCTCTACCTGTG
GACCCTGGTGGCGCCCCTGCTCCTGCCCAACCGCGACTTCAGCTGAGGCAGCCCCTGCAGCCTG
CCCACCCGGTGGTACCTTGGGTTCAGTGACAGCCCCTGCCTGCTCCCCACACCCCGTCAGCCCG
GCTGAACTGCTCCCTGCAAGACTGGCCCCGAGCTGGGCCCCATCTCCGTGCCTTTGGGTCTGAG
AGGCAGTGGGCTCACCTGAACTCCACTCTCCCGCCGCCCCAGACCACAGAGCTGCCTCTTCCTT
CCCTGCCCGGTCACCCCCATGCCCCGTTTTAGGACAGAAGCCCCAACCCCACCCCAGGGGCTGG
AGGAGAGGGGCCAGAGCCACACAGAGGGCAGCGAGCACGCCGGTGCCCAGCCCTGAGCCTGCTG
TTCCCCACCCAGCCCCTTCCTGGACCACGTGCCTTAGCAAGTCTCTGAGACTTCGCCCAATAAA
CACGACTACGTGTGCCTGCCCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_013375179	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_013375179 ⟸ XM_013519725

- Sequence:

show sequence

MGACLGACSLLSCASCLCGSAPCILCSCCPSSRNSTVSRLLFTGFLLLGVLVSIIMLSPGVESQ
LHKLPWVCEGAETPGVLQGHIDCGSLLGFRAVYRMCFATAAFFFLFTLLMICVRSSRDPRAAVQ
NGFWFFKFLILVGITVGAFYIPDGSFSNIWFYFGVVGSFLFILIQLLLLIDFAHSWNQRWLGKA
EECGSRSWYAGLFFFTLLFYALSIAAVALLFVYYTHPGTCHEGKIFISLNLVFCLCVSIVAVLP
KVQEAQPNSGLLQASVVTLYTMFVTWLALSNVPDQKCNPHLLTQLSNETVLAGPEGYETQWWDA
PSIVGLVIFILCTLFISVRSSDHRQVNSLMQTEDCSIALEATQQQQQQQVATSENRVFDNEQDG
VTYSYSFFHFCLVLASLHIMMTLTNWYRPGETHKMISTWTAVWVKICASWAGLFLYLWTLVAPL
LLPNRDFS

hide sequence

RefSeq Acc Id:

ENSCLAP00000021809 ⟸ ENSCLAT00000022012

RefSeq Acc Id:

ENSCLAP00000021810 ⟸ ENSCLAT00000022013

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000014936	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSCLAP00000021809	ENTREZGENE, UniProtKB/TrEMBL
	ENSCLAP00000021810	UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000022012	ENTREZGENE, UniProtKB/TrEMBL
	ENSCLAT00000022013	UniProtKB/TrEMBL
NCBI Gene	Serinc2	ENTREZGENE
UniProt	A0A8C2YTC0_CHILA	UniProtKB/TrEMBL
	A0A8C2YTC1_CHILA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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