Herc5 (HECT and RLD domain containing E3 ubiquitin protein ligase 5) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Herc5 (HECT and RLD domain containing E3 ubiquitin protein ligase 5) Chinchilla lanigera
Analyze
Symbol: Herc5
Name: HECT and RLD domain containing E3 ubiquitin protein ligase 5
RGD ID: 8885094
Description: ENCODES a protein that exhibits ISG15 transferase activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN innate immune response (ortholog); ISG15-protein conjugation (ortholog); protein ubiquitination (ortholog); ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); endometriosis (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: E3 ISG15--protein ligase HERC5
RGD Orthologs
Human
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495547411,954,915 - 11,991,849 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Herc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495547411,954,915 - 11,991,849 (-)NCBIChiLan1.0ChiLan1.0
HERC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38488,457,119 - 88,506,163 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl488,457,119 - 88,506,163 (+)EnsemblGRCh38hg38GRCh38
GRCh37489,378,270 - 89,427,314 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36489,597,291 - 89,646,337 (+)NCBINCBI36Build 36hg18NCBI36
Build 34489,735,484 - 89,784,492NCBI
Celera486,674,807 - 86,724,000 (+)NCBICelera
Cytogenetic Map4q22.1NCBI
HuRef485,130,235 - 85,179,511 (+)NCBIHuRef
CHM1_1489,354,759 - 89,403,799 (+)NCBICHM1_1
T2T-CHM13v2.0491,788,779 - 91,837,819 (+)NCBIT2T-CHM13v2.0
HERC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2386,461,064 - 86,512,205 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1486,723,502 - 86,774,688 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0480,747,400 - 80,795,722 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1491,470,424 - 91,518,451 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl491,470,572 - 91,518,177 (+)Ensemblpanpan1.1panPan2
HERC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13211,756,487 - 11,800,695 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3230,153,822 - 30,197,262 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03211,810,948 - 11,854,195 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3211,810,963 - 11,854,182 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13211,893,437 - 11,936,849 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03211,718,653 - 11,762,073 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03228,155,083 - 28,198,444 (-)NCBIUU_Cfam_GSD_1.0
Herc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530129,588,878 - 29,638,829 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936685917,019 - 966,814 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HERC5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8130,533,877 - 130,590,841 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18130,532,256 - 130,591,158 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28139,947,190 - 139,974,263 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HERC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1736,817,118 - 36,867,712 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl736,819,708 - 36,867,933 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603715,568,857 - 15,619,107 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Herc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475716,028,668 - 16,152,628 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475716,108,509 - 16,151,654 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013502750   ⟹   XP_013358204
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495547411,954,915 - 11,991,849 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013358204 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013358204   ⟸   XM_013502750
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Herc5 ENTREZGENE