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Gene: Acsbg1 (acyl-CoA synthetase bubblegum family member 1) Chinchilla lanigera

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Symbol:

Acsbg1

Name:

acyl-CoA synthetase bubblegum family member 1

RGD ID:

8884616

Description:

ENCODES a protein that exhibits long-chain fatty acid-CoA ligase activity (ortholog); very long-chain fatty acid-CoA ligase activity (ortholog); INVOLVED IN long-chain fatty acid biosynthetic process (ortholog); long-chain fatty acid metabolic process (ortholog); ovarian follicle atresia (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); Golgi apparatus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

long-chain-fatty-acid--CoA ligase ACSBG1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	701,517 - 745,126 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955450	703,874 - 744,782 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adrenoleukodystrophy (ISO)

Bloom syndrome (ISO)

colorectal cancer (ISO)

demyelinating disease (ISO)

Neoplasm Metastasis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

long-chain fatty acid biosynthetic process (ISO)

long-chain fatty acid metabolic process (ISO)

ovarian follicle atresia (ISO)

response to glucocorticoid (ISO)

very long-chain fatty acid metabolic process (ISO)

Cellular Component

cytoplasm (ISO)

endoplasmic reticulum (ISO)

Golgi apparatus (ISO)

peroxisome (ISO)

plasma membrane (ISO)

Molecular Function

long-chain fatty acid-CoA ligase activity (ISO)

very long-chain fatty acid-CoA ligase activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Acsbg1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	701,517 - 745,126 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955450	703,874 - 744,782 (-)	NCBI	ChiLan1.0	ChiLan1.0

ACSBG1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	78,167,468 - 78,234,565 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	78,167,468 - 78,245,688 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	78,459,810 - 78,526,907 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	76,250,242 - 76,313,954 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	76,250,243 - 76,313,954	NCBI
Celera	15	55,399,717 - 55,463,412 (-)	NCBI		Celera
Cytogenetic Map	15	q25.1	NCBI
HuRef	15	55,220,752 - 55,284,725 (-)	NCBI		HuRef
CHM1_1	15	78,581,093 - 78,645,049 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	76,030,054 - 76,108,241 (-)	NCBI		T2T-CHM13v2.0

Acsbg1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	54,512,163 - 54,569,169 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	54,512,161 - 54,569,154 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	54,604,886 - 54,661,885 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	54,604,877 - 54,661,870 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	54,452,804 - 54,509,692 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	54,403,134 - 54,460,022 (-)	NCBI		MGSCv36	mm8
Celera	9	51,848,294 - 51,906,177 (-)	NCBI		Celera
Cytogenetic Map	9	A5.3	NCBI
cM Map	9	29.7	NCBI

Acsbg1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	63,887,433 - 63,943,486 (-)	NCBI		GRCr8
mRatBN7.2	8	54,991,294 - 55,047,276 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	54,991,296 - 55,047,391 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	60,524,901 - 60,580,652 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	58,803,885 - 58,859,634 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	56,668,123 - 56,723,882 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	59,184,111 - 59,240,133 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	59,184,113 - 59,239,954 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	57,764,973 - 57,820,859 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	58,156,231 - 58,212,485 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	58,175,286 - 58,231,539 (-)	NCBI
Celera	8	54,479,867 - 54,535,554 (-)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

ACSBG1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	67,383,181 - 67,450,157 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	71,550,363 - 71,615,512 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	57,098,752 - 57,164,119 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	76,064,937 - 76,128,835 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	76,064,937 - 76,128,835 (-)	Ensembl	panpan1.1		panPan2

ACSBG1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	58,319,222 - 58,367,087 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	58,319,376 - 58,366,854 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	61,010,594 - 61,058,477 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	58,787,092 - 58,834,985 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	58,787,098 - 58,835,240 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	58,283,566 - 58,331,437 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	58,491,354 - 58,539,229 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	58,840,625 - 58,888,510 (-)	NCBI		UU_Cfam_GSD_1.0

Acsbg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	118,919,410 - 118,974,658 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	36,767,652 - 36,822,722 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	36,767,656 - 36,822,677 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ACSBG1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	47,705,121 - 47,762,538 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	47,705,091 - 47,760,797 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	53,259,397 - 53,311,982 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ACSBG1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	5,117,740 - 5,183,164 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	5,117,818 - 5,185,418 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	136,620,613 - 136,686,848 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Acsbg1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624894	2,617,711 - 2,661,174 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624894	2,618,000 - 2,661,174 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005393441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013518893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013518894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01042343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01052909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000009010 ⟹ ENSCLAP00000008882

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955450	701,517 - 745,126 (-)	Ensembl

Ensembl Acc Id:

ENSCLAT00000009011 ⟹ ENSCLAP00000008883

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955450	701,517 - 735,216 (-)	Ensembl

RefSeq Acc Id:

XM_005393441 ⟹ XP_005393498

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955450	703,874 - 735,176 (-)	NCBI

Sequence:

show sequence

CCTGGTACCTGGGGCACCGCGCTGCTCCCAGCCTCATCATGCCTTAGCTGCAGGAGCGAGGGGT
GCTGAGCCAGGAGCTCACCAGCCACAGGCAGGGGCCAGCCAGACCCTCCCCGGCAGGACCCCTG
TCATGAGTCTCCTGTGGGGGACAGCAAGCTGGGCATCAGGAGCAGGAGAGAGCAGCCAGAGGCC
TGGTCTGTGAGGGCAGTGTGGCCTCGCTGCTCACTGGGGCTGCTGTGGCTCTCCAGGGACGGTG
ACTCGCGTGCTCCCCGAGGCCCTCACTCTCTCCCTGGTGAGCTCTCGGGGTGCAGCCACCTGCA
GGGACCATGCCCGAGGTGCTTCTGCTCAGGCCCGCCAGCCTCTTCCTCAGGACCGTGTTCTTAA
GCAGACTGCTGCCAGGTGGGCCTGGGCCTAGGTGTGTTCGAAAACTTAGTTTGAACCTGCAGTA
CCAGCAAGGAATAAGGCCGAATGTTCGAAGCAGCTCCCAAACTGATGCGCAGACGTGCTCCAAA
GAGTCCTTGAGCCATGTTCTCCAGCTCTCGGCCCCAGAAAAGCCTCAGGATGTGCAGCTGGACT
GTCCAGAGGGGGCTCTGTGGACGACCAGGGCCGACGGGCGAGTCCGCCTGCGCTTGGACCCCAT
CTGCTGTCAGCCCCCCTACACTGTGCACCGCATGTTCTACGAGGCCCTGGACAAGTACGGGGAC
CTCAGTGCTCTGGGCTTCAAGCGCCAGGACAAGTGGGAGCGCATCTCCTACTACCAGTACTACC
TGATTGCCCGCAAGGCCGCCAAGGGCTTCTTGAAGCTTGGCCTGGAGCGAGCCCACAGTGTGGC
CATCCTGGGCTTCAACTCCCCTGAGTGGTTCTTCTCTGCAGTGGGCACTGTGTTTGCGGGTGGG
ATTGTCACCGGCATCTACACTACCAGCTCCCCGGAGGCCTGCCAGTACATTGCCCACGACAGCC
GCGCCAACATCATCGTGGTCGACTCACAGAAGCAGCTGGAAAAGATCCTAAAGATCTGGAAAAA
CTTGCCACACCTGAAGGCAGTGGTGATATACCAGGAACCTCCTCCCACGAAGATGGCCAATGTG
TACACGATGGAAGAACTCATGGAGCTGGGAAACCAAGTCCCCGAAGAGACCCTGGACAGCATCA
TCGAGGCCCAGACACCCAACCAATGCTGCGCCCTGGTCTACACGTCGGGCACCACCGGGAACCC
CAAGGGTGTGATGTTGAGCCAAGACAATATCACGTGGACAGCACGGTTTGGCAGCCAGGCGGGT
GACATCCAACCAGCTGAGGTCCAACAGGAGGTGGTGGTCAGCTACCTGCCCCTCAGCCACATTG
CTGCCCAGATCTACGACCTGTGGACTGGCATCCAGTGGGGGGCCCAGGTGTGCTTTGCAGAGCC
TGATGCCCTGAAGGGGAGCTTGGTGAACACACTGCGTGAGGTAGAACCCACATCCCACATGGGT
GTGCCACGTGTGTGGGAGAAGATCATGGAGCGCATTCAGGAGGTGGCCGCTCAAGCTGGCTTCA
TCCGGCGCAAGATGCTGCTGTGGGCCATGTCAGTGACCTTGGAGCAGAACCTCACCTGCCCCAG
CAGTGATCTGAAGCCCTTCACAGCCAGGCTGGCAGATTACCTGGTGCTGGCCAGGGTCCGCCAG
GCACTGGGCTTTGCCAAGTGCCAGAAGAACTTCTATGGAGCAGCCCCCATGACGGCTGAGACAC
AACGCTTCTTCCTGGGTCTCAATATCCGCTTATATGCGGGCTATGGCCTCAGCGAGAGCACAGG
TCCCCACTTCATGTCCAACCCCTACAACTACCGGCTCTACAGCTCAGGCAAGCTGGTGCCCGGC
TGCCTGGTGAAGCTAGTGAACCAAGACACGGAGGGTATCGGCGAGATCTGCCTATGGGGCCGCA
CCATCTTCATGGGCTACCTGAACATGGAGGACAAGACATGTGAGGCCATTGACTCTGAGGGCTG
GCTACACACGGGTGACACAGGCCGCCTGGACCAGGATGGCTTCCTCTACATCACAGGGCGCCTC
AAAGAGCTGATCATCACGGCGGGTGGGGAAAATGTGCCCCCCCTGCCTATTGAGGAGGCTGTGA
AGACGGAGCTGCCCATCATCAGCAACGCCATGCTGATCGGTGACCAGAGGAAGTTCTTGTCCAT
GCTACTCACCTTGAAGTGCACGCTGGACCCAGACACCTCTGACCCAACCGACAACCTAACAGAG
CAAGCTGTGGAGTTCTGCCAGAGGGTGGGCAGCAGAGCCAGCACTGTGTCTGAGATCGTGGGCC
AGCGGGATGAAGCTGTGTATCAGGCCATCGAAGAGGGGATCCAGAGGGTCAATGCAAATGCGGC
CGCCCGGCCTTATCACATCCAGAAGTGGGCCATTCTTGAGAGAGACTTCTCCATCTCAGGAGGA
GAGTTGGGTCCCACCATGAAACTCAAGCGGCTCACAGTCCTGGAGAAGTACAAAGATATCATTG
ATTCCTTTTACCAAGAACAAAAGAAGTAACTGGGGCCATCCCTGTGATTCCCAATGAGAAGAGA
AAGCAGCCTCTGCCTGCAGAGGTGTCTCCGAGTTCCAGGCTCTCCCGTGTGGCCGCAGAAACTC
AGGTCTGTCTGGCTTCCAGGCCAGAGTTCGACTCCCACATCTACAACTCCAAGAAGCTCCATAT
GCGGGTAGTTTAAATTCTGCTTAAGTGTTCAGGTGATGAAATCAACTCTTCTTTCACAACTAAA
GGGTTGATACTGCTCGGCCCTAACTCCAGGGAGACTTACCAAGCCATAGCTCAACAGTTCACCA
GAGGCCGGGGTGGGGGGTGGGGAGTCATCTTACTAGTTTGTGCTGCAGGTAAAGCCATCTAGCT
TACTTAACGGCCAGACTTTGGAATCTTCTTGGATACTGCCTAATAAAACTGCTGCTCTCATGTG
ACTGTATTTAATATGTAATATGAATATTAAACTTTTAACATAACTGTCA

hide sequence

RefSeq Acc Id:

XM_013518893 ⟹ XP_013374347

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955450	703,874 - 744,782 (-)	NCBI

Sequence:

show sequence

GCCCGCTGTGGGTCACCCAGCACCACCCCCGCCCCCGCCCCCAAGGCCAGCTCTCCCGTGGGAG
ACGGGAGCTCGGGAACTTGGAGCTCTTCTTCGCTGATGCCAAACAGTTCTGCCGCTGGACACAA
CCGCCACCCCAAGGACCCCAGAATGTCGGGCCGCAGAGACACCCCTCAGGAGACACAGCACGAC
AATGCCGTGGGGACCGACCAGGATGACTCAGGAACTGGCTCCCAAACTGATGCGCAGACGTGCT
CCAAAGAGTCCTTGAGCCATGTTCTCCAGCTCTCGGCCCCAGAAAAGCCTCAGGATGTGCAGCT
GGACTGTCCAGAGGGGGCTCTGTGGACGACCAGGGCCGACGGGCGAGTCCGCCTGCGCTTGGAC
CCCATCTGCTGTCAGCCCCCCTACACTGTGCACCGCATGTTCTACGAGGCCCTGGACAAGTACG
GGGACCTCAGTGCTCTGGGCTTCAAGCGCCAGGACAAGTGGGAGCGCATCTCCTACTACCAGTA
CTACCTGATTGCCCGCAAGGCCGCCAAGGGCTTCTTGAAGCTTGGCCTGGAGCGAGCCCACAGT
GTGGCCATCCTGGGCTTCAACTCCCCTGAGTGGTTCTTCTCTGCAGTGGGCACTGTGTTTGCGG
GTGGGATTGTCACCGGCATCTACACTACCAGCTCCCCGGAGGCCTGCCAGTACATTGCCCACGA
CAGCCGCGCCAACATCATCGTGGTCGACTCACAGAAGCAGCTGGAAAAGATCCTAAAGATCTGG
AAAAACTTGCCACACCTGAAGGCAGTGGTGATATACCAGGAACCTCCTCCCACGAAGATGGCCA
ATGTGTACACGATGGAAGAACTCATGGAGCTGGGAAACCAAGTCCCCGAAGAGACCCTGGACAG
CATCATCGAGGCCCAGACACCCAACCAATGCTGCGCCCTGGTCTACACGTCGGGCACCACCGGG
AACCCCAAGGGTGTGATGTTGAGCCAAGACAATATCACGTGGACAGCACGGTTTGGCAGCCAGG
CGGGTGACATCCAACCAGCTGAGGTCCAACAGGAGGTGGTGGTCAGCTACCTGCCCCTCAGCCA
CATTGCTGCCCAGATCTACGACCTGTGGACTGGCATCCAGTGGGGGGCCCAGGTGTGCTTTGCA
GAGCCTGATGCCCTGAAGGGGAGCTTGGTGAACACACTGCGTGAGGTAGAACCCACATCCCACA
TGGGTGTGCCACGTGTGTGGGAGAAGATCATGGAGCGCATTCAGGAGGTGGCCGCTCAAGCTGG
CTTCATCCGGCGCAAGATGCTGCTGTGGGCCATGTCAGTGACCTTGGAGCAGAACCTCACCTGC
CCCAGCAGTGATCTGAAGCCCTTCACAGCCAGGCTGGCAGATTACCTGGTGCTGGCCAGGGTCC
GCCAGGCACTGGGCTTTGCCAAGTGCCAGAAGAACTTCTATGGAGCAGCCCCCATGACGGCTGA
GACACAACGCTTCTTCCTGGGTCTCAATATCCGCTTATATGCGGGCTATGGCCTCAGCGAGAGC
ACAGGTCCCCACTTCATGTCCAACCCCTACAACTACCGGCTCTACAGCTCAGGCAAGCTGGTGC
CCGGCTGCCTGGTGAAGCTAGTGAACCAAGACACGGAGGGTATCGGCGAGATCTGCCTATGGGG
CCGCACCATCTTCATGGGCTACCTGAACATGGAGGACAAGACATGTGAGGCCATTGACTCTGAG
GGCTGGCTACACACGGGTGACACAGGCCGCCTGGACCAGGATGGCTTCCTCTACATCACAGGGC
GCCTCAAAGAGCTGATCATCACGGCGGGTGGGGAAAATGTGCCCCCCCTGCCTATTGAGGAGGC
TGTGAAGACGGAGCTGCCCATCATCAGCAACGCCATGCTGATCGGTGACCAGAGGAAGTTCTTG
TCCATGCTACTCACCTTGAAGTGCACGCTGGACCCAGACACCTCTGACCCAACCGACAACCTAA
CAGAGCAAGCTGTGGAGTTCTGCCAGAGGGTGGGCAGCAGAGCCAGCACTGTGTCTGAGATCGT
GGGCCAGCGGGATGAAGCTGTGTATCAGGCCATCGAAGAGGGGATCCAGAGGGTCAATGCAAAT
GCGGCCGCCCGGCCTTATCACATCCAGAAGTGGGCCATTCTTGAGAGAGACTTCTCCATCTCAG
GAGGAGAGTTGGGTCCCACCATGAAACTCAAGCGGCTCACAGTCCTGGAGAAGTACAAAGATAT
CATTGATTCCTTTTACCAAGAACAAAAGAAGTAACTGGGGCCATCCCTGTGATTCCCAATGAGA
AGAGAAAGCAGCCTCTGCCTGCAGAGGTGTCTCCGAGTTCCAGGCTCTCCCGTGTGGCCGCAGA
AACTCAGGTCTGTCTGGCTTCCAGGCCAGAGTTCGACTCCCACATCTACAACTCCAAGAAGCTC
CATATGCGGGTAGTTTAAATTCTGCTTAAGTGTTCAGGTGATGAAATCAACTCTTCTTTCACAA
CTAAAGGGTTGATACTGCTCGGCCCTAACTCCAGGGAGACTTACCAAGCCATAGCTCAACAGTT
CACCAGAGGCCGGGGTGGGGGGTGGGGAGTCATCTTACTAGTTTGTGCTGCAGGTAAAGCCATC
TAGCTTACTTAACGGCCAGACTTTGGAATCTTCTTGGATACTGCCTAATAAAACTGCTGCTCTC
ATGTGACTGTATTTAATATGTAATATGAATATTAAACTTTTAACATAACTGTCA

hide sequence

RefSeq Acc Id:

XM_013518894 ⟹ XP_013374348

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955450	703,874 - 735,176 (-)	NCBI

Sequence:

show sequence

CCTGGTACCTGGGGCACCGCGCTGCTCCCAGCCTCATCATGCCTTAGCTGCAGGAGCGAGGGGT
GCTGAGCCAGGAGCTCACCAGCCACAGGCAGGGGCCAGCCAGACCCTCCCCGGCAGGACCCCTG
TCATGAGTCTCCTGTGGGGGACAGCAAGCTGGGCATCAGGAGCAGGAGAGAGCAGCCAGAGGCC
TGGTCTGTGAGGGCAGTGTGGCCTCGCTGCTCACTGGGGCTGCTGTGGCTCTCCAGGGACGGTG
ACTCGCGTGCTCCCCGAGGCCCTCACTCTCTCCCTGGTGAGCTCTCGGGGTGCAGCCACCTGCA
GGGACCATGCCCGAGGTGCTTCTGCTCAGGCCCGCCAGCCTCTTCCTCAGGACCGTCTCCCAAA
CTGATGCGCAGACGTGCTCCAAAGAGTCCTTGAGCCATGTTCTCCAGCTCTCGGCCCCAGAAAA
GCCTCAGGATGTGCAGCTGGACTGTCCAGAGGGGGCTCTGTGGACGACCAGGGCCGACGGGCGA
GTCCGCCTGCGCTTGGACCCCATCTGCTGTCAGCCCCCCTACACTGTGCACCGCATGTTCTACG
AGGCCCTGGACAAGTACGGGGACCTCAGTGCTCTGGGCTTCAAGCGCCAGGACAAGTGGGAGCG
CATCTCCTACTACCAGTACTACCTGATTGCCCGCAAGGCCGCCAAGGGCTTCTTGAAGCTTGGC
CTGGAGCGAGCCCACAGTGTGGCCATCCTGGGCTTCAACTCCCCTGAGTGGTTCTTCTCTGCAG
TGGGCACTGTGTTTGCGGGTGGGATTGTCACCGGCATCTACACTACCAGCTCCCCGGAGGCCTG
CCAGTACATTGCCCACGACAGCCGCGCCAACATCATCGTGGTCGACTCACAGAAGCAGCTGGAA
AAGATCCTAAAGATCTGGAAAAACTTGCCACACCTGAAGGCAGTGGTGATATACCAGGAACCTC
CTCCCACGAAGATGGCCAATGTGTACACGATGGAAGAACTCATGGAGCTGGGAAACCAAGTCCC
CGAAGAGACCCTGGACAGCATCATCGAGGCCCAGACACCCAACCAATGCTGCGCCCTGGTCTAC
ACGTCGGGCACCACCGGGAACCCCAAGGGTGTGATGTTGAGCCAAGACAATATCACGTGGACAG
CACGGTTTGGCAGCCAGGCGGGTGACATCCAACCAGCTGAGGTCCAACAGGAGGTGGTGGTCAG
CTACCTGCCCCTCAGCCACATTGCTGCCCAGATCTACGACCTGTGGACTGGCATCCAGTGGGGG
GCCCAGGTGTGCTTTGCAGAGCCTGATGCCCTGAAGGGGAGCTTGGTGAACACACTGCGTGAGG
TAGAACCCACATCCCACATGGGTGTGCCACGTGTGTGGGAGAAGATCATGGAGCGCATTCAGGA
GGTGGCCGCTCAAGCTGGCTTCATCCGGCGCAAGATGCTGCTGTGGGCCATGTCAGTGACCTTG
GAGCAGAACCTCACCTGCCCCAGCAGTGATCTGAAGCCCTTCACAGCCAGGCTGGCAGATTACC
TGGTGCTGGCCAGGGTCCGCCAGGCACTGGGCTTTGCCAAGTGCCAGAAGAACTTCTATGGAGC
AGCCCCCATGACGGCTGAGACACAACGCTTCTTCCTGGGTCTCAATATCCGCTTATATGCGGGC
TATGGCCTCAGCGAGAGCACAGGTCCCCACTTCATGTCCAACCCCTACAACTACCGGCTCTACA
GCTCAGGCAAGCTGGTGCCCGGCTGCCTGGTGAAGCTAGTGAACCAAGACACGGAGGGTATCGG
CGAGATCTGCCTATGGGGCCGCACCATCTTCATGGGCTACCTGAACATGGAGGACAAGACATGT
GAGGCCATTGACTCTGAGGGCTGGCTACACACGGGTGACACAGGCCGCCTGGACCAGGATGGCT
TCCTCTACATCACAGGGCGCCTCAAAGAGCTGATCATCACGGCGGGTGGGGAAAATGTGCCCCC
CCTGCCTATTGAGGAGGCTGTGAAGACGGAGCTGCCCATCATCAGCAACGCCATGCTGATCGGT
GACCAGAGGAAGTTCTTGTCCATGCTACTCACCTTGAAGTGCACGCTGGACCCAGACACCTCTG
ACCCAACCGACAACCTAACAGAGCAAGCTGTGGAGTTCTGCCAGAGGGTGGGCAGCAGAGCCAG
CACTGTGTCTGAGATCGTGGGCCAGCGGGATGAAGCTGTGTATCAGGCCATCGAAGAGGGGATC
CAGAGGGTCAATGCAAATGCGGCCGCCCGGCCTTATCACATCCAGAAGTGGGCCATTCTTGAGA
GAGACTTCTCCATCTCAGGAGGAGAGTTGGGTCCCACCATGAAACTCAAGCGGCTCACAGTCCT
GGAGAAGTACAAAGATATCATTGATTCCTTTTACCAAGAACAAAAGAAGTAACTGGGGCCATCC
CTGTGATTCCCAATGAGAAGAGAAAGCAGCCTCTGCCTGCAGAGGTGTCTCCGAGTTCCAGGCT
CTCCCGTGTGGCCGCAGAAACTCAGGTCTGTCTGGCTTCCAGGCCAGAGTTCGACTCCCACATC
TACAACTCCAAGAAGCTCCATATGCGGGTAGTTTAAATTCTGCTTAAGTGTTCAGGTGATGAAA
TCAACTCTTCTTTCACAACTAAAGGGTTGATACTGCTCGGCCCTAACTCCAGGGAGACTTACCA
AGCCATAGCTCAACAGTTCACCAGAGGCCGGGGTGGGGGGTGGGGAGTCATCTTACTAGTTTGT
GCTGCAGGTAAAGCCATCTAGCTTACTTAACGGCCAGACTTTGGAATCTTCTTGGATACTGCCT
AATAAAACTGCTGCTCTCATGTGACTGTATTTAATATGTAATATGAATATTAAACTTTTAACAT
AACTGTCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005393498	(Get FASTA)	NCBI Sequence Viewer
	XP_013374347	(Get FASTA)	NCBI Sequence Viewer
	XP_013374348	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000008882
	ENSCLAP00000008882.1
	ENSCLAP00000008883
	ENSCLAP00000008883.1

RefSeq Acc Id:	XP_005393498 ⟸ XM_005393441
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2V804 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPEVLLLRPASLFLRTVFLSRLLPGGPGPRCVRKLSLNLQYQQGIRPNVRSSSQTDAQTCSKES LSHVLQLSAPEKPQDVQLDCPEGALWTTRADGRVRLRLDPICCQPPYTVHRMFYEALDKYGDLS ALGFKRQDKWERISYYQYYLIARKAAKGFLKLGLERAHSVAILGFNSPEWFFSAVGTVFAGGIV TGIYTTSSPEACQYIAHDSRANIIVVDSQKQLEKILKIWKNLPHLKAVVIYQEPPPTKMANVYT MEELMELGNQVPEETLDSIIEAQTPNQCCALVYTSGTTGNPKGVMLSQDNITWTARFGSQAGDI QPAEVQQEVVVSYLPLSHIAAQIYDLWTGIQWGAQVCFAEPDALKGSLVNTLREVEPTSHMGVP RVWEKIMERIQEVAAQAGFIRRKMLLWAMSVTLEQNLTCPSSDLKPFTARLADYLVLARVRQAL GFAKCQKNFYGAAPMTAETQRFFLGLNIRLYAGYGLSESTGPHFMSNPYNYRLYSSGKLVPGCL VKLVNQDTEGIGEICLWGRTIFMGYLNMEDKTCEAIDSEGWLHTGDTGRLDQDGFLYITGRLKE LIITAGGENVPPLPIEEAVKTELPIISNAMLIGDQRKFLSMLLTLKCTLDPDTSDPTDNLTEQA VEFCQRVGSRASTVSEIVGQRDEAVYQAIEEGIQRVNANAAARPYHIQKWAILERDFSISGGEL GPTMKLKRLTVLEKYKDIIDSFYQEQKK hide sequence

RefSeq Acc Id:	XP_013374347 ⟸ XM_013518893
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2V288 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPNSSAAGHNRHPKDPRMSGRRDTPQETQHDNAVGTDQDDSGTGSQTDAQTCSKESLSHVLQLS APEKPQDVQLDCPEGALWTTRADGRVRLRLDPICCQPPYTVHRMFYEALDKYGDLSALGFKRQD KWERISYYQYYLIARKAAKGFLKLGLERAHSVAILGFNSPEWFFSAVGTVFAGGIVTGIYTTSS PEACQYIAHDSRANIIVVDSQKQLEKILKIWKNLPHLKAVVIYQEPPPTKMANVYTMEELMELG NQVPEETLDSIIEAQTPNQCCALVYTSGTTGNPKGVMLSQDNITWTARFGSQAGDIQPAEVQQE VVVSYLPLSHIAAQIYDLWTGIQWGAQVCFAEPDALKGSLVNTLREVEPTSHMGVPRVWEKIME RIQEVAAQAGFIRRKMLLWAMSVTLEQNLTCPSSDLKPFTARLADYLVLARVRQALGFAKCQKN FYGAAPMTAETQRFFLGLNIRLYAGYGLSESTGPHFMSNPYNYRLYSSGKLVPGCLVKLVNQDT EGIGEICLWGRTIFMGYLNMEDKTCEAIDSEGWLHTGDTGRLDQDGFLYITGRLKELIITAGGE NVPPLPIEEAVKTELPIISNAMLIGDQRKFLSMLLTLKCTLDPDTSDPTDNLTEQAVEFCQRVG SRASTVSEIVGQRDEAVYQAIEEGIQRVNANAAARPYHIQKWAILERDFSISGGELGPTMKLKR LTVLEKYKDIIDSFYQEQKK hide sequence

RefSeq Acc Id:

XP_013374348 ⟸ XM_013518894

- Peptide Label:

isoform X3

- Sequence:

show sequence

MPEVLLLRPASLFLRTVSQTDAQTCSKESLSHVLQLSAPEKPQDVQLDCPEGALWTTRADGRVR
LRLDPICCQPPYTVHRMFYEALDKYGDLSALGFKRQDKWERISYYQYYLIARKAAKGFLKLGLE
RAHSVAILGFNSPEWFFSAVGTVFAGGIVTGIYTTSSPEACQYIAHDSRANIIVVDSQKQLEKI
LKIWKNLPHLKAVVIYQEPPPTKMANVYTMEELMELGNQVPEETLDSIIEAQTPNQCCALVYTS
GTTGNPKGVMLSQDNITWTARFGSQAGDIQPAEVQQEVVVSYLPLSHIAAQIYDLWTGIQWGAQ
VCFAEPDALKGSLVNTLREVEPTSHMGVPRVWEKIMERIQEVAAQAGFIRRKMLLWAMSVTLEQ
NLTCPSSDLKPFTARLADYLVLARVRQALGFAKCQKNFYGAAPMTAETQRFFLGLNIRLYAGYG
LSESTGPHFMSNPYNYRLYSSGKLVPGCLVKLVNQDTEGIGEICLWGRTIFMGYLNMEDKTCEA
IDSEGWLHTGDTGRLDQDGFLYITGRLKELIITAGGENVPPLPIEEAVKTELPIISNAMLIGDQ
RKFLSMLLTLKCTLDPDTSDPTDNLTEQAVEFCQRVGSRASTVSEIVGQRDEAVYQAIEEGIQR
VNANAAARPYHIQKWAILERDFSISGGELGPTMKLKRLTVLEKYKDIIDSFYQEQKK

hide sequence

Ensembl Acc Id:

ENSCLAP00000008882 ⟸ ENSCLAT00000009010

Ensembl Acc Id:

ENSCLAP00000008883 ⟸ ENSCLAT00000009011

Protein Domains

AMP-dependent synthetase/ligase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000006200	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000009010	ENTREZGENE
	ENSCLAT00000009010.1	UniProtKB/TrEMBL
	ENSCLAT00000009011	ENTREZGENE
	ENSCLAT00000009011.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.12780	UniProtKB/TrEMBL
InterPro	AMP-binding_CS	UniProtKB/TrEMBL
	AMP-dep_Synth/Lig	UniProtKB/TrEMBL
	ANL_N_sf	UniProtKB/TrEMBL
NCBI Gene	Acsbg1	ENTREZGENE
PANTHER	ACYL-COA SYNTHETASE BUBBLEGUM FAMILY MEMBER 1	UniProtKB/TrEMBL
	LONG-CHAIN-FATTY-ACID--COA LIGASE	UniProtKB/TrEMBL
Pfam	AMP-binding	UniProtKB/TrEMBL
PROSITE	AMP_BINDING	UniProtKB/TrEMBL
Superfamily-SCOP	Acetyl-CoA synthetase-like	UniProtKB/TrEMBL
UniProt	A0A8C2V288	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2V804	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar