Abcc9 (ATP binding cassette subfamily C member 9) - Rat Genome Database
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Gene: Abcc9 (ATP binding cassette subfamily C member 9) Chinchilla lanigera
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Symbol: Abcc9
Name: ATP binding cassette subfamily C member 9
RGD ID: 8884522
Description: ENCODES a protein that exhibits ATPase activity (ortholog); ATPase-coupled cation transmembrane transporter activity (ortholog); cation channel activity (ortholog); INVOLVED IN cardiac conduction (ortholog); cation transmembrane transport (ortholog); defense response to virus (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH Arnold-Chiari Malformation (ortholog); arrhythmogenic right ventricular cardiomyopathy (ortholog); breast ductal carcinoma (ortholog); FOUND IN acrosomal vesicle (ortholog); inward rectifying potassium channel (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ATP-binding cassette sub-family C member 9; ATP-binding cassette, sub-family C (CFTR/MRP), member 9
Orthologs:
Homo sapiens (human) : ABCC9 (ATP binding cassette subfamily C member 9)  HGNC  Alliance
Mus musculus (house mouse) : Abcc9 (ATP-binding cassette, sub-family C (CFTR/MRP), member 9)  MGI  Alliance
Rattus norvegicus (Norway rat) : Abcc9 (ATP binding cassette subfamily C member 9)  Alliance
Pan paniscus (bonobo/pygmy chimpanzee) : ABCC9 (ATP binding cassette subfamily C member 9)
Canis lupus familiaris (dog) : ABCC9 (ATP binding cassette subfamily C member 9)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Abcc9 (ATP binding cassette subfamily C member 9)
Sus scrofa (pig) : ABCC9 (ATP binding cassette subfamily C member 9)
Chlorocebus sabaeus (African green monkey) : ABCC9 (ATP binding cassette subfamily C member 9)
Heterocephalus glaber (naked mole-rat) : Abcc9 (ATP binding cassette subfamily C member 9)
more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541317,382,564 - 17,510,132 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541317,385,966 - 17,510,220 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway  (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (ISO)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
atenolol pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
diltiazem pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
ibutilide pharmacodynamics pathway  (ISO)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway  (ISO)
nadolol pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
pindolol pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway  (ISO)
verapamil pharmacodynamics pathway  (ISO)

References


Genomics

Comparative Map Data
Abcc9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541317,382,564 - 17,510,132 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541317,385,966 - 17,510,220 (-)NCBIChiLan1.0ChiLan1.0
ABCC9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1221,797,401 - 21,942,529 (-)EnsemblGRCh38hg38GRCh38
GRCh381221,797,389 - 21,941,863 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371221,950,323 - 22,094,797 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361221,841,590 - 21,980,895 (-)NCBINCBI36hg18NCBI36
Build 341221,849,374 - 21,980,875NCBI
Celera1227,105,336 - 27,244,581 (-)NCBI
Cytogenetic Map12p12.1NCBI
HuRef1221,723,876 - 21,863,675 (-)NCBIHuRef
CHM1_11221,915,604 - 22,054,751 (-)NCBICHM1_1
Abcc9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396142,533,588 - 142,648,472 (-)NCBI
GRCm386142,587,862 - 142,702,766 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6142,587,862 - 142,702,315 (-)EnsemblGRCm38mm10GRCm38
MGSCv376142,536,382 - 142,650,794 (-)NCBIGRCm37mm9NCBIm37
MGSCv366142,546,355 - 142,659,495 (-)NCBImm8
Celera6145,649,701 - 145,764,495 (-)NCBICelera
Cytogenetic Map6G2NCBI
cM Map674.35NCBI
Abcc9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04176,806,098 - 176,928,540 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4176,805,431 - 176,922,424 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04241,019,980 - 241,139,051 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44180,165,979 - 180,236,791 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11533,877,146 - 33,883,992NCBI
Celera4164,064,977 - 164,186,502 (-)NCBICelera
Cytogenetic Map4q44NCBI
ABCC9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11266,960,888 - 67,102,496 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1266,960,888 - 67,102,496 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01264,357,176 - 64,500,358 (+)NCBIMhudiblu_PPA_v0panPan3
ABCC9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2725,200,418 - 25,388,477 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12725,199,580 - 25,352,637 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Abcc9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365484,983,461 - 5,110,693 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCC9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl551,536,526 - 51,673,583 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1551,536,531 - 51,673,583 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2554,818,859 - 54,944,118 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABCC9
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1121,658,794 - 21,797,263 (-)Ensembl
ChlSab1.11121,658,804 - 21,797,851 (-)NCBI
Abcc9
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475216,792,202 - 16,926,552 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005379069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013511594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013511595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013511596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013511597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013511598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013511599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013511600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013511601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013511602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013511603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01014150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01014151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01014152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01014153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01014154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01014155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01014156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDI01325169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000025235   ⟹   ENSCLAP00000024991
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541317,382,564 - 17,510,132 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000025236   ⟹   ENSCLAP00000024992
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541317,382,564 - 17,509,123 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000025237   ⟹   ENSCLAP00000024993
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541317,390,875 - 17,505,650 (-)Ensembl
RefSeq Acc Id: XM_005379069   ⟹   XP_005379126
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541317,385,966 - 17,509,742 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511594   ⟹   XP_013367048
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541317,385,966 - 17,510,131 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511595   ⟹   XP_013367049
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541317,385,966 - 17,510,131 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511596   ⟹   XP_013367050
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541317,385,966 - 17,509,742 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511597   ⟹   XP_013367051
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541317,385,966 - 17,510,220 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511598   ⟹   XP_013367052
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541317,385,966 - 17,509,742 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511599   ⟹   XP_013367053
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541317,385,966 - 17,509,742 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511600   ⟹   XP_013367054
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541317,386,660 - 17,510,132 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511601   ⟹   XP_013367055
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541317,385,966 - 17,510,132 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511602   ⟹   XP_013367056
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541317,385,966 - 17,510,132 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511603   ⟹   XP_013367057
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541317,386,660 - 17,510,132 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005379126   ⟸   XM_005379069
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013367051   ⟸   XM_013511597
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013367055   ⟸   XM_013511601
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013367056   ⟸   XM_013511602
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013367048   ⟸   XM_013511594
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013367049   ⟸   XM_013511595
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013367053   ⟸   XM_013511599
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013367050   ⟸   XM_013511596
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013367052   ⟸   XM_013511598
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013367057   ⟸   XM_013511603
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013367054   ⟸   XM_013511600
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000024991   ⟸   ENSCLAT00000025235
RefSeq Acc Id: ENSCLAP00000024993   ⟸   ENSCLAT00000025237
RefSeq Acc Id: ENSCLAP00000024992   ⟸   ENSCLAT00000025236


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017154 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000024991 ENTREZGENE
  ENSCLAP00000024992 ENTREZGENE
  ENSCLAP00000024993 ENTREZGENE
Ensembl Transcript ENSCLAT00000025235 ENTREZGENE
  ENSCLAT00000025236 ENTREZGENE
  ENSCLAT00000025237 ENTREZGENE
NCBI Gene Abcc9 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Abcc9  ATP binding cassette subfamily C member 9    ATP-binding cassette, sub-family C (CFTR/MRP), member 9  Symbol and/or name change 5135510 APPROVED