LOC102015775 (cytochrome c oxidase subunit 7A-related protein, mitochondrial) - Rat Genome Database

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Gene: LOC102015775 (cytochrome c oxidase subunit 7A-related protein, mitochondrial) Chinchilla lanigera
Analyze
Symbol: LOC102015775 (Ensembl: COX7A2L)
Name: cytochrome c oxidase subunit 7A-related protein, mitochondrial
RGD ID: 8883997
Description: INVOLVED IN mitochondrial respirasome assembly (ortholog); regulation of oxidative phosphorylation (ortholog); ASSOCIATED WITH Lynch syndrome (ortholog); FOUND IN mitochondrial respirasome (ortholog); mitochondrion (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554419,733,894 - 9,743,354 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554419,732,168 - 9,743,052 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC102015775
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554419,733,894 - 9,743,354 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554419,732,168 - 9,743,052 (-)NCBIChiLan1.0ChiLan1.0
COX7A2L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38242,335,559 - 42,368,957 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl242,333,546 - 42,425,088 (-)EnsemblGRCh38hg38GRCh38
GRCh37242,562,699 - 42,596,097 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36242,431,146 - 42,441,860 (-)NCBINCBI36Build 36hg18NCBI36
Build 34242,489,297 - 42,500,007NCBI
Celera242,417,924 - 42,428,640 (-)NCBICelera
Cytogenetic Map2p21NCBI
HuRef242,312,008 - 42,322,727 (-)NCBIHuRef
CHM1_1242,507,075 - 42,517,803 (-)NCBICHM1_1
T2T-CHM13v2.0242,340,963 - 42,374,398 (-)NCBIT2T-CHM13v2.0
Cox7a2l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391783,809,346 - 83,821,762 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1783,809,347 - 83,824,759 (-)EnsemblGRCm39 Ensembl
GRCm381783,501,917 - 83,514,333 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1783,501,918 - 83,517,330 (-)EnsemblGRCm38mm10GRCm38
MGSCv371783,901,257 - 83,913,673 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361783,410,257 - 83,422,627 (-)NCBIMGSCv36mm8
Celera1787,843,482 - 87,856,037 (-)NCBICelera
Cytogenetic Map17E4NCBI
cM Map1753.02NCBI
Cox7a2l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8616,936,574 - 16,950,797 (+)NCBIGRCr8
mRatBN7.2611,184,064 - 11,198,287 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl611,184,285 - 11,198,273 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx611,478,130 - 11,492,350 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0611,787,460 - 11,801,680 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0611,300,814 - 11,315,039 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.066,695,807 - 6,709,790 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl66,695,827 - 6,709,783 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.066,650,352 - 6,664,329 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.466,834,523 - 6,861,652 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.166,835,178 - 6,861,594 (-)NCBI
Celera610,889,441 - 10,903,386 (+)NCBICelera
Cytogenetic Map6q12NCBI
LOC100968761
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21284,046,260 - 84,059,874 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A84,050,233 - 84,063,841 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A42,447,387 - 42,461,792 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A43,299,759 - 43,319,617 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A43,299,759 - 43,319,617 (-)Ensemblpanpan1.1panPan2
COX7A2L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11733,954,882 - 33,976,749 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1733,955,118 - 33,976,699 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1733,724,532 - 33,746,618 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01734,722,422 - 34,744,550 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1734,722,441 - 34,744,511 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11733,847,446 - 33,869,523 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01733,909,770 - 33,931,814 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01734,127,318 - 34,149,512 (-)NCBIUU_Cfam_GSD_1.0
LOC101958099
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629237,851,353 - 37,858,670 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365089,279,974 - 9,287,279 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COX7A2L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl397,951,114 - 97,983,309 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1397,951,115 - 97,983,309 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23104,086,468 - 104,118,648 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COX7A2L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11464,895,317 - 64,909,162 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604546,995,153 - 47,008,572 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101716432
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473823,975,788 - 24,066,011 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473824,058,426 - 24,065,764 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000005340   ⟹   ENSCLAP00000005244
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554419,733,894 - 9,743,354 (-)Ensembl
RefSeq Acc Id: XM_013517633   ⟹   XP_013373087
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554419,732,168 - 9,743,052 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013373087 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000005244
  ENSCLAP00000005244.1
Reference Protein Sequences
RefSeq Acc Id: XP_013373087   ⟸   XM_013517633
- Sequence:
RefSeq Acc Id: ENSCLAP00000005244   ⟸   ENSCLAT00000005340


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003724 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000005340 ENTREZGENE
  ENSCLAT00000005340.1 UniProtKB/TrEMBL
InterPro Cytc_oxidase_su7a_met UniProtKB/TrEMBL
NCBI Gene LOC102015775 ENTREZGENE
PANTHER PTHR10510 UniProtKB/TrEMBL
  PTHR10510:SF2 UniProtKB/TrEMBL
UniProt A0A8C2UU26_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 LOC102015775  cytochrome c oxidase subunit 7A-related protein, mitochondrial    uncharacterized LOC102015775  Symbol and/or name change 5135510 APPROVED