Slc4a1 (solute carrier family 4 member 1 (Diego blood group)) - Rat Genome Database

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Gene: Slc4a1 (solute carrier family 4 member 1 (Diego blood group)) Chinchilla lanigera
Analyze
Symbol: Slc4a1
Name: solute carrier family 4 member 1 (Diego blood group)
RGD ID: 8883002
Description: ENCODES a protein that exhibits actin binding (ortholog); ankyrin binding (ortholog); bicarbonate transmembrane transporter activity (ortholog); INVOLVED IN anion transport (ortholog); bicarbonate transport (ortholog); blood coagulation (ortholog); ASSOCIATED WITH abetalipoproteinemia (ortholog); ACANTHOCYTOSIS (ortholog); Alkalosis (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell surface (ortholog); cortical cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 4 (anion exchanger), member 1 (Diego blood group)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545117,315,024 - 17,328,103 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545117,318,600 - 17,330,943 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline

Genomics

Comparative Map Data
Slc4a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545117,315,024 - 17,328,103 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545117,318,600 - 17,330,943 (-)NCBIChiLan1.0ChiLan1.0
SLC4A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381744,248,390 - 44,268,135 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1744,248,390 - 44,268,141 (-)EnsemblGRCh38hg38GRCh38
GRCh371742,325,758 - 42,345,503 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361739,682,566 - 39,700,993 (-)NCBINCBI36Build 36hg18NCBI36
Build 341739,682,565 - 39,700,993NCBI
Celera1739,034,465 - 39,054,210 (-)NCBICelera
Cytogenetic Map17q21.31NCBI
HuRef1738,089,106 - 38,108,850 (-)NCBIHuRef
CHM1_11742,561,259 - 42,581,020 (-)NCBICHM1_1
T2T-CHM13v2.01745,101,499 - 45,121,240 (-)NCBIT2T-CHM13v2.0
Slc4a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911102,239,646 - 102,256,107 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11102,239,650 - 102,257,029 (-)EnsemblGRCm39 Ensembl
GRCm3811102,348,820 - 102,365,281 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11102,348,824 - 102,366,203 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711102,210,134 - 102,226,595 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611102,164,917 - 102,181,205 (-)NCBIMGSCv36mm8
Celera11114,058,195 - 114,074,658 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1166.29NCBI
Slc4a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21087,306,865 - 87,323,132 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1087,306,872 - 87,323,117 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1092,337,653 - 92,353,898 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01091,809,157 - 91,825,395 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01087,202,487 - 87,218,725 (-)NCBIRnor_WKY
Rnor_6.01090,296,144 - 90,312,401 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1090,296,141 - 90,312,386 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01090,084,734 - 90,101,181 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41091,454,824 - 91,471,072 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11091,470,679 - 91,479,502 (-)NCBI
Celera1086,018,849 - 86,032,669 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
SLC4A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11713,302,796 - 13,317,312 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1713,302,796 - 13,317,312 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01713,131,851 - 13,150,872 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SLC4A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1919,142,884 - 19,159,449 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl919,146,480 - 19,157,915 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha918,535,326 - 18,546,756 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0919,836,393 - 19,852,954 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl919,839,985 - 19,851,420 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1918,693,717 - 18,705,143 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0918,877,006 - 18,888,427 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0919,021,401 - 19,032,836 (+)NCBIUU_Cfam_GSD_1.0
Slc4a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560218,460,919 - 18,477,383 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936541718,577 - 729,876 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936541718,577 - 727,420 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC4A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1218,957,807 - 18,974,208 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11218,957,813 - 18,975,266 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21219,180,392 - 19,196,592 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC4A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11662,126,370 - 62,146,192 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1662,131,709 - 62,146,182 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607732,895,386 - 32,915,473 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc4a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624795743,646 - 752,103 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624795739,821 - 752,773 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000022595   ⟹   ENSCLAP00000022390
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545117,315,024 - 17,328,013 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000022596   ⟹   ENSCLAP00000022391
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545117,319,603 - 17,328,103 (-)Ensembl
RefSeq Acc Id: XM_005394528   ⟹   XP_005394585
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545117,318,600 - 17,330,518 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005394529   ⟹   XP_005394586
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545117,318,600 - 17,330,943 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013519370   ⟹   XP_013374824
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545117,318,600 - 17,327,443 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005394585 (Get FASTA)   NCBI Sequence Viewer  
  XP_005394586 (Get FASTA)   NCBI Sequence Viewer  
  XP_013374824 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005394586   ⟸   XM_005394529
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005394585   ⟸   XM_005394528
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013374824   ⟸   XM_013519370
- Peptide Label: isoform X2
- UniProtKB: A0A8C2W2R4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000022390   ⟸   ENSCLAT00000022595
RefSeq Acc Id: ENSCLAP00000022391   ⟸   ENSCLAT00000022596
Protein Domains
Band_3_cyto   HCO3_cotransp


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015354 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000022390 ENTREZGENE
  ENSCLAP00000022390.1 UniProtKB/TrEMBL
  ENSCLAP00000022391.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000022595 ENTREZGENE
  ENSCLAT00000022595.1 UniProtKB/TrEMBL
  ENSCLAT00000022596.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.930.10 UniProtKB/TrEMBL
InterPro Anion_exchange UniProtKB/TrEMBL
  Anion_exchange_1 UniProtKB/TrEMBL
  Anion_exchange_CS UniProtKB/TrEMBL
  Band3_cytoplasmic_dom UniProtKB/TrEMBL
  HCO3_transpt-like_TM_dom UniProtKB/TrEMBL
  HCO3_transpt_euk UniProtKB/TrEMBL
  PTrfase/Anion_transptr UniProtKB/TrEMBL
NCBI Gene Slc4a1 ENTREZGENE
PANTHER PTHR11453 UniProtKB/TrEMBL
Pfam Band_3_cyto UniProtKB/TrEMBL
  HCO3_cotransp UniProtKB/TrEMBL
PRINTS ANIONEXCHNGR UniProtKB/TrEMBL
  ANIONEXHNGR1 UniProtKB/TrEMBL
  HCO3TRNSPORT UniProtKB/TrEMBL
PROSITE ANION_EXCHANGER_1 UniProtKB/TrEMBL
  ANION_EXCHANGER_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF55804 UniProtKB/TrEMBL
TIGRFAMs TIGR00834 UniProtKB/TrEMBL
UniProt A0A8C2W2R4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2W548_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Slc4a1  solute carrier family 4 member 1 (Diego blood group)    solute carrier family 4 (anion exchanger), member 1 (Diego blood group)  Symbol and/or name change 5135510 APPROVED
2015-08-25 Slc4a1  solute carrier family 4 (anion exchanger), member 1 (Diego blood group)    solute carrier family 4 (anion exchanger), member 1  Symbol and/or name change 5135510 APPROVED